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...atattttaatcttaagctaaaaaaatgattgcccggttaactgagttatcattatcacatgctaatgttatcaggtgaaacttccctatgataactgcagGGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAACGTGGATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTT
species | Physcomitrella patens |
transcript | PP1S77_205V6.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTTTTATCGTTGGTGTCACATCTACGGTCCTTTGGAGCAAAATCGCCATG GGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAACEST: gi|37826395|gb|BJ584407.1|BJ584407
genomic: CTTTTATCGTTGGTGTCACATCTACGGTCCTTTGGAGCAAAATCGCCATGgtattgtcgt ... ataactgcagGGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAAC
EST: CTTTTATCGTTGGTGTCACATCTACGGTCCTTTGGAGCAAAATCGCCATG GGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAACEST: gi|19786753|gb|BQ040535.1|BQ040535
genomic: CTTTTATCGTTGGTGTCACATCTACGGTCCTTTGGAGCAAAATCGCCATGgtattgtcgt ... ataactgcagGGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAAC
EST: CTTTTATCGTTGGTGTCACATCTACGGTCCTTTGGAGCAAAATCGCCATG GGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAACEST: gi|162173656|gb|FC349624.1|FC349624
genomic: CTTTTATCGTTGGTGTCACATCTACGGTCCTTTGGAGCAAAATCGCCATGgtattgtcgt ... ataactgcagGGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAAC
EST: CTTTTATCGTTGGTGTCACATCTACGGTCCTTTGGAGCAAAATCGCCATG GGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAACEST: gi|162173657|gb|FC349625.1|FC349625
genomic: CTTTTATCGTTGGTGTCACATCTACGGTCCTTTGGAGCAAAATCGCCATGgtattgtcgt ... ataactgcagGGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAAC
EST: CTTTTATCGTTGGTGTCACATCTACGGTCCTTTGGAGCAAAATCGCCATG GGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAACEST: gi|37837364|gb|BJ595372.1|BJ595372
genomic: CTTTTATCGTTGGTGTCACATCTACGGTCCTTTGGAGCAAAATCGCCATGgtattgtcgt ... ataactgcagGGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAAC
EST: CTTTTATCGTTGGTGTCACATCTACGGTCCTTTGGAGCAAAATCGCCATG GGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAACEST: gi|162171019|gb|FC346918.1|FC346918
genomic: CTTTTATCGTTGGTGTCACATCTACGGTCCTTTGGAGCAAAATCGCCATGgtattgtcgt ... ataactgcagGGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAAC
EST: CTTTTATCGTTGGTGTCACATCTACGGTCCTTTGGAGCAAAATCGCCATG GGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAACEST: gi|162156712|gb|FC333555.1|FC333555
genomic: CTTTTATCGTTGGTGTCACATCTACGGTCCTTTGGAGCAAAATCGCCATGgtattgtcgt ... ataactgcagGGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAAC
EST: CTTTTATCGTTGGTGTCACATCTACGGTCCTTTGGAGCAAAATCGCCATG GGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAACEST: gi|208372492|gb|DC948732.1|DC948732
genomic: CTTTTATCGTTGGTGTCACATCTACGGTCCTTTGGAGCAAAATCGCCATGgtattgtcgt ... ataactgcagGGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAAC
EST: CTTTTATCGTTGGTGTCACATCTACGGTCCTTTGGAGCAAAATCGCCATG GGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAACEST: gi|162270283|gb|FC447295.1|FC447295
genomic: CTTTTATCGTTGGTGTCACATCTACGGTCCTTTGGAGCAAAATCGCCATGgtattgtcgt ... ataactgcagGGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAAC
EST: CTTTTATCGTTGGTGTCACATCTACGGTCCTTTGGAGCAAAATCGCCATG GGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAAC
genomic: CTTTTATCGTTGGTGTCACATCTACGGTCCTTTGGAGCAAAATCGCCATGgtattgtcgt ... ataactgcagGGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAAC
ttatcattatcacatgctaatgttatcaggtgaaacttccctatgataactgcagGGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAACGTGGATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTT
tgataac putative branch site (score: 7)
taatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattttaatcttaagctaaaaaaatgattgcccggttaactgagttatcattatcacatgctaatgttatcaggtgaaacttccctatgataactgcagGGTTTAGGCCATACTGCACTTGCTACAATATTGTGGTACCGGTCTCGGAACGTGGATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatgc