1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTACGACATGTTGCGCAGGAATGCGCTGCGCGCGGATTCCATCAAGTGCTTCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgttgttgtcgttgctgttgttgttgttgttgccaggtgccggtgagcgtttgtggagaattgtgtttggtcgtggtgggagcggtgtggatgg...
species | Physcomitrella patens |
transcript | PP1S77_16V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|162245915|gb|FC420504.1|FC420504
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|162216576|gb|FC392473.1|FC392473
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|208373838|gb|DC956326.1|DC956326
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGG-TTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|162253751|gb|FC429865.1|FC429865
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|162156058|gb|FC332225.1|FC332225
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: GACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|162187052|gb|FC362834.1|FC362834
genomic: GACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|67724165|gb|BJ974424.1|BJ974424
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|162177225|gb|FC352654.1|FC352654
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACGACATGTTGCGCAGGAATGCGCTGCGCGCGGATTCCATCAAGTGCTTCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgttgttgtcgttgctgttgttgttgttgttgccaggtgccggtgagcgtttgtggagaattgtgtttggtcgtggtgggagcggtgtggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG