1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cgattttgtacctttaaatcagatccttgagtccaaattggggggctgttttcacgtgtatccttactgatttctctatgtctcatttcaacccattcagGAATTGTTTTCGGAAGTTGGTGATTTGAAGAGATGCTCTATTAACTACGATCGAAGCGGTCGTTCTAAG
species | Physcomitrella patens |
transcript | PP1S77_164V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AA-TGTACATCTCCAACCNTGATTATGGAGTCTCGAACGATGACATTAAG GAATTGTTTTCGGAAGTTGGTGATTTGAAGAGATGCTCTATTAACTACGATEST: gi|67724423|gb|BJ974682.1|BJ974682
genomic: AATTGTACATCTCCAACCTTGATTATGGAGTCTCGAACGATGACATTAAGgtaaggttgc ... acccattcagGAATTGTTTTCGGAAGTTGGTGATTTGAAGAGATGCTCTATTAACTACGAT
EST: AATTGTACATCTCCAACCTTGATTATGGAGTCTCGAACGATGACATTAAG GAATTGTTTTCGGAAGTTGGTGATTTGAAGAGATGCTCTATTAACTACGATEST: gi|162211634|gb|FC387922.1|FC387922
genomic: AATTGTACATCTCCAACCTTGATTATGGAGTCTCGAACGATGACATTAAGgtaaggttgc ... acccattcagGAATTGTTTTCGGAAGTTGGTGATTTGAAGAGATGCTCTATTAACTACGAT
EST: TACATCTCCAACCTTGATTATGGAGTCTCGAACGATGACATTAAG GAATTGTTTTCGGAAGTTGGTGATTTGAAGAGATGCTCTATTAACTACGATEST: gi|67572631|gb|BJ945455.1|BJ945455
genomic: TACATCTCCAACCTTGATTATGGAGTCTCGAACGATGACATTAAGgtaaggttgc ... acccattcagGAATTGTTTTCGGAAGTTGGTGATTTGAAGAGATGCTCTATTAACTACGAT
EST: AATTGTACATCTCCAACCTTGATTATGGAGTCTCGAACGATGACATTAAG GAATTGTTTTCGGAAGTTGGTGATTTGAAGAGATGCTCTATTAACTACGATEST: gi|67724216|gb|BJ974475.1|BJ974475
genomic: AATTGTACATCTCCAACCTTGATTATGGAGTCTCGAACGATGACATTAAGgtaaggttgc ... acccattcagGAATTGTTTTCGGAAGTTGGTGATTTGAAGAGATGCTCTATTAACTACGAT
EST: AATTGTACATCTCCAACCTTGATTATGGAGTCTCGAACGATGACATTAAG GAATTGTTTTCGGAAGTTGGTGATTTGAAGAGATGCTCTATTAACTACGAT
genomic: AATTGTACATCTCCAACCTTGATTATGGAGTCTCGAACGATGACATTAAGgtaaggttgc ... acccattcagGAATTGTTTTCGGAAGTTGGTGATTTGAAGAGATGCTCTATTAACTACGAT
ctgttttcacgtgtatccttactgatttctctatgtctcatttcaacccattcagGAATTGTTTTCGGAAGTTGGTGATTTGAAGAGATGCTCTATTAACTACGATCGAAGCGGTCGTTCTAAG
tactgat putative branch site (score: 2)
cccattc putative PPT
atttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgattttgtacctttaaatcagatccttgagtccaaattggggggctgttttcacgtgtatccttactgatttctctatgtctcatttcaacccattcagGAATTGTTTTCGGAAGTTGGTGATTTGAAGAGATGCTCTATTAACTACGATCGAAGCGGTCGTTCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG