1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGGTGCTGCCGTAGGCTACCCCGGAGGCAAAACCTCAGGGCCAGCCCGCAGACAAGTGGGCCGGGCAGTCGCCCGGCCAACGCCTTACGCGAGCGCAAAGgcaagcaaagcggcatccccttattcacttattcacttagtggcaatggcagaccttgaaagagtcagtagggataaggaaacagaaagagagagagaga...
species | Physcomitrella patens |
transcript | PP1S77_164V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GACAAGTGGGCCGGGCAGTCGCCCGGCCAACGCCTTACGCGAGCGCAAAG TTAATGCGCCGCGTCCCGGATTATGCTTTCCAGTACGCGGACAACTTTCTAEST: gi|67572631|gb|BJ945455.1|BJ945455
genomic: GACAAGTGGGCCGGGCAGTCGCCCGGCCAACGCCTTACGCGAGCGCAAAGgcaagcaaag ... ctgtgaacagTTAATGCGCCGCGTCCCGGATTATGCTTTCCAGTACGCGGACAACTTTCTA
EST: GACAAGTGGGCCGGGCAGTCGCCCGGCCAACGCCTTACGCGAGCGCAAAG TTAATGCGCCGCGTCCCGGATTATGCTTTCCAGTACGCGGACAACTTTCTAEST: gi|162211635|gb|FC387923.1|FC387923
genomic: GACAAGTGGGCCGGGCAGTCGCCCGGCCAACGCCTTACGCGAGCGCAAAGgcaagcaaag ... ctgtgaacagTTAATGCGCCGCGTCCCGGATTATGCTTTCCAGTACGCGGACAACTTTCTA
EST: GACAAGTGGGCCGGGCAGTCGCCCGGCCAACGCCTTACGCGAGCGCAAAG TTAATGCGCCGCGTCCCGGATTATGCTTTCCAGTACGCGGACAACTTTCTAEST: gi|67724216|gb|BJ974475.1|BJ974475
genomic: GACAAGTGGGCCGGGCAGTCGCCCGGCCAACGCCTTACGCGAGCGCAAAGgcaagcaaag ... ctgtgaacagTTAATGCGCCGCGTCCCGGATTATGCTTTCCAGTACGCGGACAACTTTCTA
EST: ACAAGTGGNCCGGGCAGTCGCCCGGCCCAACGCCTTACGCGAGCGCAAAG TTAATGCGCCGCGTCCCGGATTATGCTTTCCAGTACGCGGACAACTTTCTA
genomic: ACAAGTGGGCCGGGCAGTCGCCCGG-CCAACGCCTTACGCGAGCGCAAAGgcaagcaaag ... ctgtgaacagTTAATGCGCCGCGTCCCGGATTATGCTTTCCAGTACGCGGACAACTTTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTGCTGCCGTAGGCTACCCCGGAGGCAAAACCTCAGGGCCAGCCCGCAGACAAGTGGGCCGGGCAGTCGCCCGGCCAACGCCTTACGCGAGCGCAAAGgcaagcaaagcggcatccccttattcacttattcacttagtggcaatggcagaccttgaaagagtcagtagggataaggaaacagaaagagagagagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG