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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAAGGAGAACATGACCCTGGAGGAGGGGACGAGGCTTCTAGAGAAAGCCTTGCTGGTCTTGTTCTACCGTGACCGTTCTGCTATCAACAAAATCCAGgtatcttccagcagtgccacaaaaactttcacaacagcgttgaacataaattttagagtccatgaaactcattcctgtttttgctggaaaggttcatgttttgtcaggtattgatctattgtatatcag

Basic information

species Physcomitrella patens
transcript PP1S6_196V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S6_196V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G023080_T01 (Zea mays), 5'ss of exon 5
GTGGAAGGAGAACATGACCCTGGAGGAGGGGACGAGGCTTCTAGAGAAAGCCTTGCTGGTCTTGTTCTACCGTGACCGTTCTGCTATCAACAAAATCCAGgtatcttccagcagtgccacaaaaactttcacaacagcgttgaacataaattttagagtccatgaaactcattcctgtttttgctggaaaggttcatgttttgtcaggtattgatctattgtatatcag
 |||   ||| | |||||  | || || |     | |||  | |||||   ||||||||||||| | ||||||||| | ||  ||||||||||| |||||||||   ||    |  |  |      || ||  |  ||  | | ||  ||    | | || |  ||  |   |  | |  || | |       | || | | || |  |                    
ATGGCGCGAGGATATGACTTTTGAAGAAGCTGTTAAGCTGGTTGAGAAGTGCTTGCTGGTCTTGCTGTACCGTGACAGGTCATCTATCAACAAATTCCAGgtatgaacctattgatcttcg-----ttaca-gattgctctaaccagtaa----acattcaacaaaggttcattttatgattacagatttatctaatctgtggttaaattacag---------------