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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCACACGCGTTATGTACAACCGCCGCAATAAGTTTGACCCTTTGTGGAACACCCTAATCCTCGGTGGCGTCAAAAACGGCGTTAAGCATCTGGGAAGCgtaagtgaaatcaaatgcaaacccctgagtacatatgattgcttcagtacaattctttattccgtgacaatggaggatacaacttgattaaatgcaaccattttctacacattccccactacgtttttttcacatctggatgctaattagagatgaaaaaactccag

Basic information

species Physcomitrella patens
transcript PP1S6_196V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S6_196V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT1G56450.1 (Arabidopsis thaliana), 5'ss of exon 5
TCTCACACGCGTTATGTACAACCGCCGCAATAAGTTTGACCCTTTGTGGAACACCCTAATCCTCGGTGGCGTCAAAAACGGCGTTAAGCATCTGGGAAGCgtaagtgaaatcaaatgcaaacccctgagtacatatgattgcttcagtacaattctttattccgtgacaatggaggatacaacttgattaaatgcaaccattttctacacattccccactacgtttttttcacatctggatgctaattagagatgaaaaaactccag
||| || || || ||||||||||| ||||| |||||| ||||| |||||||||| ||  |||| || ||||||||||| ||    |   | || ||||  ||| ||   |     |  |  | | |   || | ||  |    | | |  || | || |||  |   || | |    | |    |                                                                                  
TCTGACCCGTGTGATGTACAACCGTCGCAACAAGTTTAACCCTCTGTGGAACACTCTCGTCCTTGGAGGCGTCAAAAATGGGAAAAGTTACCTTGGAATGgtacgtctcagtctttcaagtcacatatataaa-attttcttatgaatgtaactattgatttggatccatttgc---ttctctctag--------------------------------------------------------------------------------