1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCAAGAGATGCATGGTGTCAGTGAAATGTTGATGAGGCAGTTGCTAAAGCTGGATGGTGTTGAGGCAGATGGAGATGCCAAAGCAATGAGGAGGGCAGAGgtatgctttatcctagttgtttatcttcaggactcacataaaccaatcatgttcattcttttcacgtgcttatccaaccatctcctatgcctactcaata...
species | Physcomitrella patens |
transcript | PP1S6_195V6.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGATGGTGTTGAGGCAGATGGAGATGCCAAAGCAATGAGGAGGGCAGAG GTGAAGAGGATTCAGAATTTGGTGGAAACAATTGATGGATTACGAGGTTTGEST: gi|18338830|gb|BJ170855.1|BJ170855
genomic: TGGATGGTGTTGAGGCAGATGGAGATGCCAAAGCAATGAGGAGGGCAGAGgtatgcttta ... tgattatcagGTGAAGAGGATTCAGAATTTGGTGGAAACAATTGATGGATTACGAGGTTTG
EST: TGGATGGTGTTGAGGCAGATGGAGATGCCAAAGCAATGAGGAGGGCAGAG GTGAAGAGGATTCAGAATTTGGTGGAAACAATTGATGGATTACGAGGTTTGEST: gi|37847127|gb|BJ605135.1|BJ605135
genomic: TGGATGGTGTTGAGGCAGATGGAGATGCCAAAGCAATGAGGAGGGCAGAGgtatgcttta ... tgattatcagGTGAAGAGGATTCAGAATTTGGTGGAAACAATTGATGGATTACGAGGTTTG
EST: TGGATGGTGTTGAGGCAGATGGAGATGCCAAAGCAATGAGGAGGGCAGAG GTGAAGAGGATTCAGAATTTGGTGGAAACAATTGATGGATTACGAGGTTTGEST: gi|37847533|gb|BJ605541.1|BJ605541
genomic: TGGATGGTGTTGAGGCAGATGGAGATGCCAAAGCAATGAGGAGGGCAGAGgtatgcttta ... tgattatcagGTGAAGAGGATTCAGAATTTGGTGGAAACAATTGATGGATTACGAGGTTTG
EST: TGGATGGTGTTGAGGCAGATGGAGATGCCAAAGCAATGAGGAGGGCAGAG GTGAAGAGGATTCAGAATTTGGTGGAAACAATTGATGGATTACGAGGTTTG
genomic: TGGATGGTGTTGAGGCAGATGGAGATGCCAAAGCAATGAGGAGGGCAGAGgtatgcttta ... tgattatcagGTGAAGAGGATTCAGAATTTGGTGGAAACAATTGATGGATTACGAGGTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAGAGATGCATGGTGTCAGTGAAATGTTGATGAGGCAGTTGCTAAAGCTGGATGGTGTTGAGGCAGATGGAGATGCCAAAGCAATGAGGAGGGCAGAGgtatgctttatcctagttgtttatcttcaggactcacataaaccaatcatgttcattcttttcacgtgcttatccaaccatctcctatgcctactcaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG