1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...caaatattaagaacaataccgagcatattgttcatgttgatttttctttgatcaaggtcgctgctgttagttgatcatcccaatcgataatcgtgtgaagGGGATGTAAAGAATTTGCTGGTTGAAGACACGGGTTTGCAGCCCTTTGAAATGCGGCTCCTATTTAGAGGCAAAGAGAAGGAGGATAGCGACCCCCTTCA
species | Physcomitrella patens |
transcript | PP1S6_195V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCATGGTCTTTTTGGCCACGACGTTAGTGTGCCTGCTCACGCTACATTCG GGGATGTAAAGAATTTGCTGGTTGAAGACACGGGTTTGCAGCCCTTTGAAAEST: gi|18366737|gb|BJ198816.1|BJ198816
genomic: GCATGGTCTTTTTGGCCACGACGTTAGTGTGCCTGCTCACGCTACATTCGgtacatcata ... tcgtgtgaagGGGATGTAAAGAATTTGCTGGTTGAAGACACGGGTTTGCAGCCCTTTGAAA
EST: GCATGGTCTTTTTGGCCACGACGTTAGTGTGCCTGCTCACGCTACATTCG GGGATGTAAAGAATTTGCTGGTTGAAGACACGGGTTTGCAGCCCTTTGAAA
genomic: GCATGGTCTTTTTGGCCACGACGTTAGTGTGCCTGCTCACGCTACATTCGgtacatcata ... tcgtgtgaagGGGATGTAAAGAATTTGCTGGTTGAAGACACGGGTTTGCAGCCCTTTGAAA
ctttgatcaaggtcgctgctgttagttgatcatcccaatcgataatcgtgtgaagGGGATGTAAAGAATTTGCTGGTTGAAGACACGGGTTTGCAGCCCTTTGAAATGCGGCTCCTATTTAGAGGCAAAGAGAAGGAGGATAGCGACCCCCTTCA
agttgat putative branch site (score: 5)
ataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaatattaagaacaataccgagcatattgttcatgttgatttttctttgatcaaggtcgctgctgttagttgatcatcccaatcgataatcgtgtgaagGGGATGTAAAGAATTTGCTGGTTGAAGACACGGGTTTGCAGCCCTTTGAAATGCGGCTCCTATTTAGAGGCAAAGAGAAGGAGGATAGCGACCCCCTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT