1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgggccttccacatctcttgtgttcttggatttgttttgaattgcatgcttctgactttacttgtcacatgaggcatactgaaaatgaccgtcttttcagGTAGAAACTTTTCAGTTAGCAACGAGGAGTGGAAATAAACCAGCAGACCAAGAGATGCATGGTGTCAGTGAAATGTTGATGAGGCAGTTGCTAAAGCTGG
species | Physcomitrella patens |
transcript | PP1S6_195V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCAGGCCATCAGTAGCATCCGAGGAGAGGTCGACAAGTATGCCTCACAG GTAGAAACTTTTCAGTTAGCAACGAGGAGTGGAAATAAACCAGCAGACCAAEST: gi|18338830|gb|BJ170855.1|BJ170855
genomic: GCCAGGCCATCAGTAGCATCCGAGGAGAGGTCGACAAGTATGCCTCACAGgtgtgtgttt ... gtcttttcagGTAGAAACTTTTCAGTTAGCAACGAGGAGTGGAAATAAACCAGCAGACCAA
EST: GCCAGGCCATCAGTAGCATCCGAGGAGAGGTCGACAAGTATGCCTCACAG GTAGAAACTTTTCAGTTAGCAACGAGGAGTGGAAATAAACCAGCAGACCAAEST: gi|37847127|gb|BJ605135.1|BJ605135
genomic: GCCAGGCCATCAGTAGCATCCGAGGAGAGGTCGACAAGTATGCCTCACAGgtgtgtgttt ... gtcttttcagGTAGAAACTTTTCAGTTAGCAACGAGGAGTGGAAATAAACCAGCAGACCAA
EST: GCCAGGCCATCAGTAGCATCCGAGGAGAGGTCGACAAGTATGCCTCACAG GTAGAAACTTTTCAGTTAGCAACGAGGAGTGGAAATAAACCAGCAGACCAAEST: gi|37847533|gb|BJ605541.1|BJ605541
genomic: GCCAGGCCATCAGTAGCATCCGAGGAGAGGTCGACAAGTATGCCTCACAGgtgtgtgttt ... gtcttttcagGTAGAAACTTTTCAGTTAGCAACGAGGAGTGGAAATAAACCAGCAGACCAA
EST: GCCAGGCCATCAGTAGCATCCGAGGAGAGGTCGACAAGTATGCCTCACAG GTAGAAACTTTTCAGTTAGCAACGAGGAGTGGAAATAAACCAGCAGACCAA
genomic: GCCAGGCCATCAGTAGCATCCGAGGAGAGGTCGACAAGTATGCCTCACAGgtgtgtgttt ... gtcttttcagGTAGAAACTTTTCAGTTAGCAACGAGGAGTGGAAATAAACCAGCAGACCAA
atgcttctgactttacttgtcacatgaggcatactgaaaatgaccgtcttttcagGTAGAAACTTTTCAGTTAGCAACGAGGAGTGGAAATAAACCAGCAGACCAAGAGATGCATGGTGTCAGTGAAATGTTGATGAGGCAGTTGCTAAAGCTGG
ttctgac putative branch site (score: 4)
ccgtcttttc putative PPT
tttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgggccttccacatctcttgtgttcttggatttgttttgaattgcatgcttctgactttacttgtcacatgaggcatactgaaaatgaccgtcttttcagGTAGAAACTTTTCAGTTAGCAACGAGGAGTGGAAATAAACCAGCAGACCAAGAGATGCATGGTGTCAGTGAAATGTTGATGAGGCAGTTGCTAAAGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatga