Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGTTTTTTGCGTCAATATAGTGCTTGGAAACGTCAGCCTGCGTTACATACCTATTTCCTTCATGCAGACTATCAAATCCTTCACACCTGCCACTACAGgtacgccatgttgttgcaagctattgcgtacttttgttctcgaatttagttttcgtttcgttaactggtcctgctctcatttcactcttccttaactgga...

Basic information

species Physcomitrella patens
transcript PP1S6_175V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S6_175V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os04g59550.1 (Oryza sativa), 5'ss of exon 3
ATCGTTTTTTGCGTCAATATAGTGCTTGGAAACGTCAGCCTGCGTTACATACCTATTTCCTTCATGCAGACTATCAAATCCTTCACACCTGCCACTACAGgtac-gccatgttgttgcaagctattgcgt-act-tttgttctcgaatttagttttcgtttcgttaactggtcctgctctcatttcactcttccttaactgga------------------------
 | || || ||| | || || ||||| ||||| ||||||||||| ||||| ||  | ||||| ||||||||||||||||| ||||| ||||| || || ||||  | ||| |||   |    ||   | | ||| ||   | |  | ||| |||||| |  | ||| |   |        ||| | || |   |     |||                         
TTTGTCTTCTGCATAAACATCGTGCTCGGAAATGTCAGCCTGCGCTACATCCCAGTCTCCTTTATGCAGACTATCAAATCTTTCACCCCTGCAACCACGGgtagagtcattttgcacctccttacatcatcactattccatattcattttcgttttcttagcattatcatattgctacagcatgtaacaccctccctgatggtctgcttccaatccatgtcatgcag

upper sequence: PP1S6_175V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G127591_T02 (Zea mays), 5'ss of exon 1
ATCGTTTTTTGCGTCAATATAGTGCTTGGAAACGTCAGCCTGCGTTACATACCTATTTCCTTCATGCAGACTATCAAATCCTTCACACCTGCCACTACAGgtacgccatgttgttgcaagctattgcgtacttttgttctcgaatttagttttcgtttcgttaac-tggtcctgctctcatttcactcttccttaactgga
 |||| || ||| | || || ||||| ||||| |||||| |||| ||||| ||  | |||||||||||||| |||||||| ||||| ||||| || |||||||   | || | |  |      ||| |||  ||  ||      | | || |     || | | | |  ||     ||   ||||                
TTCGTCTTCTGCATAAACATTGTGCTGGGAAATGTCAGCTTGCGCTACATCCCAGTCTCCTTCATGCAGACAATCAAATCTTTCACTCCTGCAACCACAGgtatatcttgatataccctcactttgtgtatcttgcttgcttgctgtcgtatcatcatcatcatcatcatctcctgcttggttcag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100449172|gb|CJ973471.1|CJ973471
EST:     ACCTATTTCCTTCATGCAGACTATCAAATCCTTCACACCTGCCACTACAG                         TGGCGCTGCAGTGGCTGGTGTGNAAAAA-TCTTTCGACNGTCGTGTT-GGC
genomic: ACCTATTTCCTTCATGCAGACTATCAAATCCTTCACACCTGCCACTACAGgtacgccatg ... gaattttcagTGGCGCTGCAGTGGCTGGTGTGGAAAAAATCTTTCGACCGTCGTGTTTGGC