Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...accgtggatagtatgattgtggagtaatacgaagtgtttccttattttattttgattatgttcgtcttcgtaaggggttacggtcactgggaattttcagTGGCGCTGCAGTGGCTGGTGTGGAAAAAATCTTTCGACCGTCGTGTTTGGCTCTCTCTGATTCCAATAGTTGGGGGAATTGTGCTGACCTCCGTCACTGA

Basic information

species Physcomitrella patens
transcript PP1S6_175V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100449172|gb|CJ973471.1|CJ973471
EST:     ACCTATTTCCTTCATGCAGACTATCAAATCCTTCACACCTGCCACTACAG                         TGGCGCTGCAGTGGCTGGTGTGNAAAAA-TCTTTCGACNGTCGTGTT-GGC
genomic: ACCTATTTCCTTCATGCAGACTATCAAATCCTTCACACCTGCCACTACAGgtacgccatg ... gaattttcagTGGCGCTGCAGTGGCTGGTGTGGAAAAAATCTTTCGACCGTCGTGTTTGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattttgattatgttcgtcttcgtaaggggttacggtcactgggaattttcagTGGCGCTGCAGTGGCTGGTGTGGAAAAAATCTTTCGACCGTCGTGTTTGGCTCTCTCTGATTCCAATAGTTGGGGGAATTGTGCTGACCTCCGTCACTGA
    ttttgat  putative branch site (score: 4)
                                                ttttc  putative PPT
     tttgattat  TA-rich tract