1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacgtttcttagaaacgacagacttcttatctcataattttcatatcagcactatgaatgtgctacaaataaattgcgggaccagacgtaacaattaattgtttatggtgggcgattgtgcagGAAGGTGCTTTAAGAGCTGAAGACATTATCGATCGCATCAGTAAAGTTCTATGATCGCACAAGCTGATTATCAACATATTCTGTTTCTTCTGAACATTTA
species | Physcomitrella patens |
transcript | PP1S6_132V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CACTGCCCACAATGGTGCTTTTTAAAGGCGGAAAAGTTGCTGATAGAATT GAAGGTGCTTTAAGAGCTGAAGACATTATCGATCGCATCAGTAAAGTTCTAEST: gi|37851169|gb|BJ609177.1|BJ609177
genomic: CACTGCCCACAATGGTGCTTTTTAAAGGCGGAAAAGTTGCTGATAGAATTgtacgtttct ... gattgtgcagGAAGGTGCTTTAAGAGCTGAAGACATTATCGATCGCATCAGTAAAGTTCTA
EST: CACTGCCCACAATGGTGCTTTTTAAAGGCGGAAAAGTTGCTGATAGAATT GAAGGTGCTTTAAGAGCTGAAGACATTATCGATCGCATCAGTAAAGTTCTAEST: gi|208383079|gb|DC919526.1|DC919526
genomic: CACTGCCCACAATGGTGCTTTTTAAAGGCGGAAAAGTTGCTGATAGAATTgtacgtttct ... gattgtgcagGAAGGTGCTTTAAGAGCTGAAGACATTATCGATCGCATCAGTAAAGTTCTA
EST: CACTGCCCACAATGGTGCTTTTTAAAGGCGGAAAAGTTGCTGATAGAATT GAAGGTGCTTTAAGAGCTGAAGACATTATCGATCGCATCAGTAAAGTTCTAEST: gi|208371153|gb|DC955973.1|DC955973
genomic: CACTGCCCACAATGGTGCTTTTTAAAGGCGGAAAAGTTGCTGATAGAATTgtacgtttct ... gattgtgcagGAAGGTGCTTTAAGAGCTGAAGACATTATCGATCGCATCAGTAAAGTTCTA
EST: CACTGCCCACAATGGTGCTTTTTAAAGGCGGAAAAGTTGCTGATAGAATT GAAGGTGCTTTAAGAGCTGAAGACATTATCGATCGCATCAGTAAAGTTCTAEST: gi|208366519|gb|DC954841.1|DC954841
genomic: CACTGCCCACAATGGTGCTTTTTAAAGGCGGAAAAGTTGCTGATAGAATTgtacgtttct ... gattgtgcagGAAGGTGCTTTAAGAGCTGAAGACATTATCGATCGCATCAGTAAAGTTCTA
EST: CACTGCCCACAATGGTGCTTTTTAAAGGCGGAAAAGTTGCTGATAGAATT GAAGGTGCTTTAAGAGCTGAAGACATTATCGATCGCATCAGTAAAGTTCTA
genomic: CACTGCCCACAATGGTGCTTTTTAAAGGCGGAAAAGTTGCTGATAGAATTgtacgtttct ... gattgtgcagGAAGGTGCTTTAAGAGCTGAAGACATTATCGATCGCATCAGTAAAGTTCTA
ataaattgcgggaccagacgtaacaattaattgtttatggtgggcgattgtgcagGAAGGTGCTTTAAGAGCTGAAGACATTATCGATCGCATCAGTAAAGTTCTATGATCGCACAAGCTGATTATCAACATATTCTGTTTCTTCTGAACATTTA
aattaat putative branch site (score: 1)
taacaattaattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtttcttagaaacgacagacttcttatctcataattttcatatcagcactatgaatgtgctacaaataaattgcgggaccagacgtaacaattaattgtttatggtgggcgattgtgcagGAAGGTGCTTTAAGAGCTGAAGACATTATCGATCGCATCAGTAAAGTTCTATGATCGCACAAGCTGATTATCAACATATTCTGTTTCTTCTGAACATTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT