1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TAAGGTTGTGGGAAATTTGGGTCAAGCCTCGGAGGGTGTCAGGAGGAGCACATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGGgtatattccttctctcttaatggctagtcgctcaagtataccaatccaactgatatgagtgctttttatctattattttagaaaatagtgtttatttgca...
species | Physcomitrella patens |
transcript | PP1S6_132V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGG GGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAATEST: gi|208388743|gb|DC953477.1|DC953477
genomic: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGGgtatattcct ... gtcatttcagGGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAAT
EST: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGG GGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAATEST: gi|208349519|gb|DC905643.1|DC905643
genomic: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGGgtatattcct ... gtcatttcagGGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAAT
EST: CATTTGGCCGAGGATCAGTCTTTTCATGTANAAGTCGACCGGAATTTCGG GGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAATEST: gi|208375355|gb|DC940465.1|DC940465
genomic: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGGgtatattcct ... gtcatttcagGGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAAT
EST: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGG GGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAATEST: gi|100448412|gb|CJ972711.1|CJ972711
genomic: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGGgtatattcct ... gtcatttcagGGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAAT
EST: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAANTCGACCGGAATTTCGG GGTCAAGCTACCAAACAAACCTTTTCNTCGTTTGACGATATGCTCGANAATEST: gi|208358904|gb|DC942986.1|DC942986
genomic: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGGgtatattcct ... gtcatttcagGGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAAT
EST: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGG GGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAATEST: gi|208391997|gb|DC941845.1|DC941845
genomic: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGGgtatattcct ... gtcatttcagGGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAAT
EST: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGG GGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAATEST: gi|37851169|gb|BJ609177.1|BJ609177
genomic: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGGgtatattcct ... gtcatttcagGGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAAT
EST: GGATCAGTCTTTTCATGTAGAAGTCGNCCGGAATTTCGG GGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAATEST: gi|208383079|gb|DC919526.1|DC919526
genomic: GGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGGgtatattcct ... gtcatttcagGGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAAT
EST: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGG GGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAATEST: gi|208371153|gb|DC955973.1|DC955973
genomic: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGGgtatattcct ... gtcatttcagGGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAAT
EST: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGG GGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAATEST: gi|208366519|gb|DC954841.1|DC954841
genomic: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGGgtatattcct ... gtcatttcagGGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAAT
EST: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGG GGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAATEST: gi|100389014|gb|BY952218.1|BY952218
genomic: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGGgtatattcct ... gtcatttcagGGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAAT
EST: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGATTTTCGG GGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAAT
genomic: CATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGGgtatattcct ... gtcatttcagGGTCAAGCTACCAAACAAACCTTTTCTTCGTTTGACGATATGCTCGAGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGGTTGTGGGAAATTTGGGTCAAGCCTCGGAGGGTGTCAGGAGGAGCACATTTGGCCGAGGATCAGTCTTTTCATGTAGAAGTCGACCGGAATTTCGGgtatattccttctctcttaatggctagtcgctcaagtataccaatccaactgatatgagtgctttttatctattattttagaaaatagtgtttatttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaata