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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGCAGTGTGGGCACCCTTCCCACCTCCCCATCTCGTCTCGTCCTCCCAGCTTGCTTCCACTGTCCGCTTCTTCCTGCCCTCGATCTTACTTACAGCAGgttttcaacttgtcgctaccactgtttcaactgtcttgcactgatcgagattgagttgcggttgcggtggagatgtcggtcttttggtgggataacgtcg...

Basic information

species Physcomitrella patens
transcript PP1S6_102V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18330652|gb|BJ162658.1|BJ162658
EST:     GCTTGCTTCCACTGTCCGCTTCTTCCTGCCCTCGATCTTACTTACAGCAG                         TGTGTTCACCGTATATCTGGTCAATTCTTGATCATGGAGACGTCGGCGGTT
genomic: GCTTGCTTCCACTGTCCGCTTCTTCCTGCCCTCGATCTTACTTACAGCAGgttttcaact ... attctcgcagTGTGTTCACCGTATATCTGGTCAATTCTTGATCATGGAGACGTCGGCGGTT
EST: gi|18360967|gb|BJ193031.1|BJ193031
EST:     GCTTGCTTCCACTGTCCGCTTCTTCCTGCCCTCGATCTTACTTACAGCAG                         TGTGTTCACCGTATATCTGGTCAATTCTTGATCATGGAGACGTCGGCGGTT
genomic: GCTTGCTTCCACTGTCCGCTTCTTCCTGCCCTCGATCTTACTTACAGCAGgttttcaact ... attctcgcagTGTGTTCACCGTATATCTGGTCAATTCTTGATCATGGAGACGTCGGCGGTT
EST: gi|18328467|gb|BJ160472.1|BJ160472
EST:     GCTTGCTTCCACTGTCCGCTTCTTCCTGCCCTCGATCTTACTTACAGCAG                         TGTGTTCACCGTATATCTGGTCAATTCTTGATCATGGAGACGTCGGCGGTT
genomic: GCTTGCTTCCACTGTCCGCTTCTTCCTGCCCTCGATCTTACTTACAGCAGgttttcaact ... attctcgcagTGTGTTCACCGTATATCTGGTCAATTCTTGATCATGGAGACGTCGGCGGTT