1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atttctggtgcccttgctgttcatattcctgatcactattcctcgaagtttgcaaccgactcctggatcctgacaaacgtaaacgtgagtattctcgcagTGTGTTCACCGTATATCTGGTCAATTCTTGATCATGGAGACGTCGGCGGTTGAATTGCAAATGTCTACAGACGCAGTCCATCAGAGAGAAACTGGAGAAA
species | Physcomitrella patens |
transcript | PP1S6_102V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTTGCTTCCACTGTCCGCTTCTTCCTGCCCTCGATCTTACTTACAGCAG TGTGTTCACCGTATATCTGGTCAATTCTTGATCATGGAGACGTCGGCGGTTEST: gi|18360967|gb|BJ193031.1|BJ193031
genomic: GCTTGCTTCCACTGTCCGCTTCTTCCTGCCCTCGATCTTACTTACAGCAGgttttcaact ... attctcgcagTGTGTTCACCGTATATCTGGTCAATTCTTGATCATGGAGACGTCGGCGGTT
EST: GCTTGCTTCCACTGTCCGCTTCTTCCTGCCCTCGATCTTACTTACAGCAG TGTGTTCACCGTATATCTGGTCAATTCTTGATCATGGAGACGTCGGCGGTTEST: gi|18328467|gb|BJ160472.1|BJ160472
genomic: GCTTGCTTCCACTGTCCGCTTCTTCCTGCCCTCGATCTTACTTACAGCAGgttttcaact ... attctcgcagTGTGTTCACCGTATATCTGGTCAATTCTTGATCATGGAGACGTCGGCGGTT
EST: GCTTGCTTCCACTGTCCGCTTCTTCCTGCCCTCGATCTTACTTACAGCAG TGTGTTCACCGTATATCTGGTCAATTCTTGATCATGGAGACGTCGGCGGTT
genomic: GCTTGCTTCCACTGTCCGCTTCTTCCTGCCCTCGATCTTACTTACAGCAGgttttcaact ... attctcgcagTGTGTTCACCGTATATCTGGTCAATTCTTGATCATGGAGACGTCGGCGGTT
aagtttgcaaccgactcctggatcctgacaaacgtaaacgtgagtattctcgcagTGTGTTCACCGTATATCTGGTCAATTCTTGATCATGGAGACGTCGGCGGTTGAATTGCAAATGTCTACAGACGCAGTCCATCAGAGAGAAACTGGAGAAA
tcctgac putative branch site (score: 2)
tattctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttctggtgcccttgctgttcatattcctgatcactattcctcgaagtttgcaaccgactcctggatcctgacaaacgtaaacgtgagtattctcgcagTGTGTTCACCGTATATCTGGTCAATTCTTGATCATGGAGACGTCGGCGGTTGAATTGCAAATGTCTACAGACGCAGTCCATCAGAGAGAAACTGGAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA