1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ccgactgagccttcagcatgattagtgctagtgagtattatattgtaacaaatcagatcgacatttagtttaccttcagcttgcttgtttgacgctgcagAATCATAGGTTCTCGTATAATGAGCCTATGAGTGTGGAGTCTACTACACAAGCCCTGTGTGATCTGGCTTTACGTTTTGGGGAAGGCGACGAAGAATCAA
species | Physcomitrella patens |
transcript | PP1S69_9V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCACTGCGGATGCTCGCACACTTGTTGAACATGGCCGTGTGGAAACTCAG AATCATAGGTTCTCGTATAATGAGCCTATGAGTGTGGAGTCTACTACACAAEST: gi|7583756|gb|AW699661.1|AW699661
genomic: TCACTGCGGATGCTCGCACACTTGTTGAACATGGCCGTGTGGAAACTCAGgtctttgttc ... gacgctgcagAATCATAGGTTCTCGTATAATGAGCCTATGAGTGTGGAGTCTACTACACAA
EST: TCACTGCGGATGCTCGCACACTTGTTGAACATGGCCGTGTGGAAACTCAG AATCATAGGTTCTCGTATAATGAGCCTATGAGTGTGGAGTCTACTACACAAEST: gi|162189533|gb|FC365755.1|FC365755
genomic: TCACTGCGGATGCTCGCACACTTGTTGAACATGGCCGTGTGGAAACTCAGgtctttgttc ... gacgctgcagAATCATAGGTTCTCGTATAATGAGCCTATGAGTGTGGAGTCTACTACACAA
EST: TCACTGCGGATGCTCGCACACTTGTTGAACATGGCCGTGTGGAAACTCAG AATCATAGGTTCTCGTATAATGAGCCTATGAGTGTGGAGTCTACTACACAAEST: gi|162230158|gb|FC406306.1|FC406306
genomic: TCACTGCGGATGCTCGCACACTTGTTGAACATGGCCGTGTGGAAACTCAGgtctttgttc ... gacgctgcagAATCATAGGTTCTCGTATAATGAGCCTATGAGTGTGGAGTCTACTACACAA
EST: TCACTGCGGATGCTCGCACACTTGTTGAACATGGCCGTGTGGAAACTCAG AATCATAGGTTCTCGTATAATGAGCCTATGAGTGTGGAGTCTACTACACAAEST: gi|18370147|gb|BJ201749.1|BJ201749
genomic: TCACTGCGGATGCTCGCACACTTGTTGAACATGGCCGTGTGGAAACTCAGgtctttgttc ... gacgctgcagAATCATAGGTTCTCGTATAATGAGCCTATGAGTGTGGAGTCTACTACACAA
EST: TCACTGCGGATGCTCGCACACTTGTTGAACATGGCCGTGTGGAAACTCAG AATCATAGGTTCTCGTATAATGAGCCTATGAGTGTGGAGTCTACTACACAAEST: gi|162189532|gb|FC365754.1|FC365754
genomic: TCACTGCGGATGCTCGCACACTTGTTGAACATGGCCGTGTGGAAACTCAGgtctttgttc ... gacgctgcagAATCATAGGTTCTCGTATAATGAGCCTATGAGTGTGGAGTCTACTACACAA
EST: TCACTGCGGATGCTCGCACACTTGTTGAACATGGCCGTGTGGAAACTCAG AATCATAGGTTCTCGTATAATGAGCCTATGAGTGTGGAGTCTACTACACAAEST: gi|37846603|gb|BJ604611.1|BJ604611
genomic: TCACTGCGGATGCTCGCACACTTGTTGAACATGGCCGTGTGGAAACTCAGgtctttgttc ... gacgctgcagAATCATAGGTTCTCGTATAATGAGCCTATGAGTGTGGAGTCTACTACACAA
EST: TCACTGCGGATGCTCGCACACTTGTTGAACATGGCCGTGTGGAAACTCAG AATCATAGGTTCTCGTATAATGAGCCTATGAGTGTGGAGTCTACTACACAAEST: gi|37841581|gb|BJ599589.1|BJ599589
genomic: TCACTGCGGATGCTCGCACACTTGTTGAACATGGCCGTGTGGAAACTCAGgtctttgttc ... gacgctgcagAATCATAGGTTCTCGTATAATGAGCCTATGAGTGTGGAGTCTACTACACAA
EST: TCACTGCGGATGCTCGCACACTTGTTGAACATGGCCGTGTGGAAACTCAG AATCATAGGTTCTCGTATAATGAGCCTATGAGTGTGGAGTCTACTACACAA
genomic: TCACTGCGGATGCTCGCACACTTGTTGAACATGGCCGTGTGGAAACTCAGgtctttgttc ... gacgctgcagAATCATAGGTTCTCGTATAATGAGCCTATGAGTGTGGAGTCTACTACACAA
taacaaatcagatcgacatttagtttaccttcagcttgcttgtttgacgctgcagAATCATAGGTTCTCGTATAATGAGCCTATGAGTGTGGAGTCTACTACACAAGCCCTGTGTGATCTGGCTTTACGTTTTGGGGAAGGCGACGAAGAATCAA
atttagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgactgagccttcagcatgattagtgctagtgagtattatattgtaacaaatcagatcgacatttagtttaccttcagcttgcttgtttgacgctgcagAATCATAGGTTCTCGTATAATGAGCCTATGAGTGTGGAGTCTACTACACAAGCCCTGTGTGATCTGGCTTTACGTTTTGGGGAAGGCGACGAAGAATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA