1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTTGGTTCCACGGCAGTGGGATTGAAGACCAAGGAGGGAGTTGTTTTGGCCGTCGAGAAGCGAATAACCTCAGTTTTGTTGgtgagtcgcagaagttgattttctcgcttcctttctcaagtcgatttttgaagtacgttttcagcgtaggctctgcgctagactctgcagcgatttattt...
species | Physcomitrella patens |
transcript | PP1S69_9V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGAGGGAGTTGTTTTGGCCGTCGAGAAGCGAATAACNTCAGTTTTGTTG GAACCCACCAGTGTCGAGAAGATCATGGAAATCGATGAACATATTGGGTGTEST: gi|162189533|gb|FC365755.1|FC365755
genomic: AGGAGGGAGTTGTTTTGGCCGTCGAGAAGCGAATAACCTCAGTTTTGTTGgtgagtcgca ... gggcttgtagGAACCCACCAGTGTCGAGAAGATCATGGAAATCGATGAACATATTGGGTGT
EST: AGGAGGGAGTTGTTTTGGCCGTCGAGAAGCGAATAACCTCAGTTTTGTTG GAACCCACCAGTGTCGAGAAGATCATGGAAATCGATGAACATATTGGGTGTEST: gi|18370147|gb|BJ201749.1|BJ201749
genomic: AGGAGGGAGTTGTTTTGGCCGTCGAGAAGCGAATAACCTCAGTTTTGTTGgtgagtcgca ... gggcttgtagGAACCCACCAGTGTCGAGAAGATCATGGAAATCGATGAACATATTGGGTGT
EST: AGGAGGGAGTTGTTTTGGCCGTCGAGAAGCGAATAACCTCAGTTTTGTTG GAACCCACCAGTGTCGAGAAGATCATGGAAATCGATGAACATATTGGGTGTEST: gi|162189532|gb|FC365754.1|FC365754
genomic: AGGAGGGAGTTGTTTTGGCCGTCGAGAAGCGAATAACCTCAGTTTTGTTGgtgagtcgca ... gggcttgtagGAACCCACCAGTGTCGAGAAGATCATGGAAATCGATGAACATATTGGGTGT
EST: GGGAGTTGTTTTGGCCGTCGAGAAGCGAATAACCTCAGTTTTGTTG GAACCCACCAGTGTCGAGAAGATCATGGAAATCGATGAACATATTGGGTGTEST: gi|37846603|gb|BJ604611.1|BJ604611
genomic: GGGAGTTGTTTTGGCCGTCGAGAAGCGAATAACCTCAGTTTTGTTGgtgagtcgca ... gggcttgtagGAACCCACCAGTGTCGAGAAGATCATGGAAATCGATGAACATATTGGGTGT
EST: CAGTTTTGTTG GAACCCACCAGTGTCGAGAAGATCATGGAAATCGATGAACATATTGGGTGTEST: gi|37841581|gb|BJ599589.1|BJ599589
genomic: CAGTTTTGTTGgtgagtcgca ... gggcttgtagGAACCCACCAGTGTCGAGAAGATCATGGAAATCGATGAACATATTGGGTGT
EST: AGGAGGGAGTTGTTTTGGCCGTCGAGAAGCGAATAACCTCAGTTTTGTTG GAACCCACCAGTGTCGAGAAGATCATGGAAATCGATGAACATATTGGGTGT
genomic: AGGAGGGAGTTGTTTTGGCCGTCGAGAAGCGAATAACCTCAGTTTTGTTGgtgagtcgca ... gggcttgtagGAACCCACCAGTGTCGAGAAGATCATGGAAATCGATGAACATATTGGGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGTTCCACGGCAGTGGGATTGAAGACCAAGGAGGGAGTTGTTTTGGCCGTCGAGAAGCGAATAACCTCAGTTTTGTTGgtgagtcgcagaagttgattttctcgcttcctttctcaagtcgatttttgaagtacgttttcagcgtaggctctgcgctagactctgcagcgatttattt
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