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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACATTTGGGGTGAGGATGCCGAAGATTTCCGGCCTGAGCGCTGGATCAAGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAGgtcttcacttaattctcgctccccagattcacacactgatgtagaatcttaattcatgtctgcataacgcaacctcttcatggtagttgtgtattgaagttaaacgcttgtattttcggtggatgtttgcttcatcag

Basic information

species Physcomitrella patens
transcript PP1S69_66V6.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37846828|gb|BJ604836.1|BJ604836
EST:     AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAG                         GCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
genomic: AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAGgtcttcactt ... gcttcatcagGCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
EST: gi|208373291|gb|DC944948.1|DC944948
EST:     AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAG                         GCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
genomic: AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAGgtcttcactt ... gcttcatcagGCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
EST: gi|208364745|gb|DC954475.1|DC954475
EST:     AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAG                         GCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
genomic: AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAGgtcttcactt ... gcttcatcagGCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
EST: gi|208386156|gb|DC949067.1|DC949067
EST:     AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAG                         GCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
genomic: AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAGgtcttcactt ... gcttcatcagGCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
EST: gi|37837813|gb|BJ595821.1|BJ595821
EST:     AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAG                         GCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
genomic: AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAGgtcttcactt ... gcttcatcagGCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
EST: gi|208372001|gb|DC951978.1|DC951978
EST:     AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAG                         GCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
genomic: AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAGgtcttcactt ... gcttcatcagGCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
EST: gi|37840224|gb|BJ598232.1|BJ598232
EST:     AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAG                         GCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
genomic: AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAGgtcttcactt ... gcttcatcagGCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG