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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttcacttaattctcgctccccagattcacacactgatgtagaatcttaattcatgtctgcataacgcaacctcttcatggtagttgtgtattgaagttaaacgcttgtattttcggtggatgtttgcttcatcagGCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAGATGGCTTCTGCACTTTTGTGCCGGTTTTTCAAGTTTGAATTGGCGCCGG

Basic information

species Physcomitrella patens
transcript PP1S69_66V6.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S69_66V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: Vv01s0026g02700.t01 (Vitis vinifera), 3'ss of exon 5
gtcttcacttaattctcgctccccagattcacacactgatgtagaatcttaattcatgtctgcataacgcaacctcttcatggtagttgtgtattgaagttaaacgcttgtattttcggtggatgtttgcttcat-----cagGCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAGATGGCTTCTGCACTTTTGTGCCGGTTTTTCAAGTTTGAATTGGCGCCGG
                 |||    || || | | | |         | ||||  | |   |    | |  |   |         | || || | || |  ||  | |     || | | ||| | ||   |   |     |||||||| ||  |||| ||||| ||||||||||||||||| || ||||||||||||||    ||  | |||||  |||||||||| ||  | || |  |  |
-------------gtatgcttggaaggttgaga-att--ccccaggttttaagacttcattttgcagcaaatggtggaggctaaaattatgaaatgga--taggcaccaaggttgttgatggttcttgtttctgtgattgcagGCTGGTCCAAGGATATGCCTTGGGAAGGACTCGGCATATCTCCAAATGAAGATGGCAATAGCTTTATTGTGTAGGTTTTTCAAATTCAATTTAGTACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37846828|gb|BJ604836.1|BJ604836
EST:     AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAG                         GCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
genomic: AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAGgtcttcactt ... gcttcatcagGCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
EST: gi|208373291|gb|DC944948.1|DC944948
EST:     AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAG                         GCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
genomic: AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAGgtcttcactt ... gcttcatcagGCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
EST: gi|208364745|gb|DC954475.1|DC954475
EST:     AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAG                         GCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
genomic: AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAGgtcttcactt ... gcttcatcagGCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
EST: gi|208386156|gb|DC949067.1|DC949067
EST:     AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAG                         GCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
genomic: AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAGgtcttcactt ... gcttcatcagGCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
EST: gi|37837813|gb|BJ595821.1|BJ595821
EST:     AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAG                         GCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
genomic: AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAGgtcttcactt ... gcttcatcagGCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
EST: gi|208372001|gb|DC951978.1|DC951978
EST:     AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAG                         GCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
genomic: AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAGgtcttcactt ... gcttcatcagGCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
EST: gi|37840224|gb|BJ598232.1|BJ598232
EST:     AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAG                         GCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG
genomic: AGGACGGCGTGTTCACCCCTTTGTCGCCATTCAAATTCAGTGCATTCCAGgtcttcactt ... gcttcatcagGCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttgtgtattgaagttaaacgcttgtattttcggtggatgtttgcttcatcagGCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAGATGGCTTCTGCACTTTTGTGCCGGTTTTTCAAGTTTGAATTGGCGCCGG
                                          tttgcttc  CT-rich tract
                        ttgtatttt  TA-rich tract