1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...taggggctgatctctgatcaattctagatgcggttgatgtacttggtgcacgtaatttatacttgctgagtcgtatgcttattgaggactgggatggtagTGTCCAGATTTGCACCTTGTACACGTGGAAACCATTGGCGGGGATAAACCCGGCACTCCAGAATCACTTGGCCCTCGCGGTAATGCTAAAGCTTCGCTCG
species | Physcomitrella patens |
transcript | PP1S69_54V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGCGGTAGGCATTGTCCGGCATGAGCGAGTGTCGGAGGCTCTTCGCAAG TGTCCAGATTTGCACCTTGTACACGTGGAAACCATTGGCGGGGATAAACCCEST: gi|18359737|gb|BJ191798.1|BJ191798
genomic: GGGCGGTAGGCATTGTCCGGCATGAGCGAGTGTCGGAGGCTCTTCGCAAGgttagttccc ... gggatggtagTGTCCAGATTTGCACCTTGTACACGTGGAAACCATTGGCGGGGATAAACCC
EST: GGGCGGTAGGCATTGTCCGGCATGAGCGAGTGTCGGAGGCTCTTCGCAAG TGTCCAGATTTGCACCTTGTACACGTGGAAACCATTGGCGGGGATAAACCC
genomic: GGGCGGTAGGCATTGTCCGGCATGAGCGAGTGTCGGAGGCTCTTCGCAAGgttagttccc ... gggatggtagTGTCCAGATTTGCACCTTGTACACGTGGAAACCATTGGCGGGGATAAACCC
gtgcacgtaatttatacttgctgagtcgtatgcttattgaggactgggatggtagTGTCCAGATTTGCACCTTGTACACGTGGAAACCATTGGCGGGGATAAACCCGGCACTCCAGAATCACTTGGCCCTCGCGGTAATGCTAAAGCTTCGCTCG
taatttatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggggctgatctctgatcaattctagatgcggttgatgtacttggtgcacgtaatttatacttgctgagtcgtatgcttattgaggactgggatggtagTGTCCAGATTTGCACCTTGTACACGTGGAAACCATTGGCGGGGATAAACCCGGCACTCCAGAATCACTTGGCCCTCGCGGTAATGCTAAAGCTTCGCTCG
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