1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GATCGAGTATTGACGGCGTATCGAGGCGTCTGGGAATACCGGCAGTAGATTGCAGTGGTGGACTAAAgtaagcaagcacacgtatgggatggggggacgattagaggtggacaagggagtttcggaagagttgggttgtggtggatgggcgttggttttgaggaggg...
species | Physcomitrella patens |
transcript | PP1S69_46V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTATCGAGGCGTCTGGGAATACCGGCAGTAGATTGCAGTGGTGGACTAAA TTGCAGGATTGTAATCGGAAAGAGGTTCTTCTAGCAACCAAAAGAAAGAGAEST: gi|18368806|gb|BJ200891.1|BJ200891
genomic: GTATCGAGGCGTCTGGGAATACCGGCAGTAGATTGCAGTGGTGGACTAAAgtaagcaagc ... aggtgcacagTTGCAGGATTGTAATCGGAAAGAGGTTCTTCTAGCAACCAAAAGAAAGAGA
EST: GTATCGAGGCGTCTGGGAATACCGGCAGTAGATTGCAGTGGTGGACTAAAGTGCACAEST: gi|18368806|gb|BJ200891.1|BJ200891
genomic: GTATCGAGGCGTCTGGGAATACCGGCAGTAGATTGCAGTGGTGGACT--A----A-Agtaagcaagc ... aggt
EST: GTATCGAGGCGTCTGGGAATACCGGCAGTAGATTGCAGTGGTGGACTAAAGTGCACA
genomic: GTATCGAGGCGTCTGGGAATACCGGCAGTAGATTGCAGTGGTGGACT--A----A-Agtaagcaagc ... aggt
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCGAGTATTGACGGCGTATCGAGGCGTCTGGGAATACCGGCAGTAGATTGCAGTGGTGGACTAAAgtaagcaagcacacgtatgggatggggggacgattagaggtggacaagggagtttcggaagagttgggttgtggtggatgggcgttggttttgaggaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA