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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcttgcaatgctattatttgtcatgggatatggtggtatggggaggaagtcgtgcagggcgactgtcggttgtcattgacggttttagtcaggtgcacagTTGCAGGATTGTAATCGGAAAGAGGTTCTTCTAGCAACCAAAAGAAAGAGAAGCTCGCCAAGGTTTCTTTTCCAGGTGCCGGGGTTAATGCTTGACAGTA

Basic information

species Physcomitrella patens
transcript PP1S69_46V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100449050|gb|CJ973349.1|CJ973349
EST:     GTATCGAGGCGTCTGGGAATACCGGCAGTAGATTGCAGTGGTGGACTAAA                         TTGCAGGATTGTAATCGGAAAGAGGTTCTTCTAGCAACCAAAAGAAAGAGA
genomic: GTATCGAGGCGTCTGGGAATACCGGCAGTAGATTGCAGTGGTGGACTAAAgtaagcaagc ... aggtgcacagTTGCAGGATTGTAATCGGAAAGAGGTTCTTCTAGCAACCAAAAGAAAGAGA
EST: gi|18368806|gb|BJ200891.1|BJ200891
EST:     GTATCGAGGCGTCTGGGAATACCGGCAGTAGATTGCAGTGGTGGACTAAAGTGCACA                   
genomic: GTATCGAGGCGTCTGGGAATACCGGCAGTAGATTGCAGTGGTGGACT--A----A-Agtaagcaagc ... aggt
EST: gi|18368806|gb|BJ200891.1|BJ200891
EST:     GTATCGAGGCGTCTGGGAATACCGGCAGTAGATTGCAGTGGTGGACTAAAGTGCACA                   
genomic: GTATCGAGGCGTCTGGGAATACCGGCAGTAGATTGCAGTGGTGGACT--A----A-Agtaagcaagc ... aggt


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagtcgtgcagggcgactgtcggttgtcattgacggttttagtcaggtgcacagTTGCAGGATTGTAATCGGAAAGAGGTTCTTCTAGCAACCAAAAGAAAGAGAAGCTCGCCAAGGTTTCTTTTCCAGGTGCCGGGGTTAATGCTTGACAGTA
                            cattgac  putative branch site (score: 3)
                                     ttttagt  TA-rich tract