1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtatgctatggtcgatttgcgcgtcgaatgcaaaaatattgtaggttgtcgtatcgattcccgttaattttttggtcacgataattctgtactgaattggttcgcattatttacagGAGAAGTGGTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACCGTCTCATAAATCCCTTTCGCTGCAGTCAAGTAGCTTAAATGACTTGTCG
species | Physcomitrella patens |
transcript | PP1S66_174V6.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AACTCAAGAAACCATTGCGTACATCTGCTTTTCCAAGCACTCATGTGAAG GAGAAGTGGTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACCEST: gi|37824529|gb|BJ582595.1|BJ582595
genomic: AACTCAAGAAA-CATTGCGTACATCTGCTTTTCCAAGCACTCATGTGAAGgtatgctatg ... ttatttacagGAGAAGTGGTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACC
EST: TTCCAAGCACTCATGTGAAG GAGAAGTGNTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACCEST: gi|162176121|gb|FC351889.1|FC351889
genomic: TTCCAAGCACTCATGTGAAGgtatgctatg ... ttatttacagGAGAAGTGGTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACC
EST: AAACTCAAGAAACATTGCGTACATCTGCTTTTCCAAGCACTCATGTGAAG GAGAAGTGGTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACCEST: gi|37820939|gb|BJ579005.1|BJ579005
genomic: AAACTCAAGAAACATTGCGTACATCTGCTTTTCCAAGCACTCATGTGAAGgtatgctatg ... ttatttacagGAGAAGTGGTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACC
EST: AAACTCAAGAAACATTGCGTACATCTGCTTTTCCAAGCACTCATGTGAAG GAGAAGTGGTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACCEST: gi|162165454|gb|FC342021.1|FC342021
genomic: AAACTCAAGAAACATTGCGTACATCTGCTTTTCCAAGCACTCATGTGAAGgtatgctatg ... ttatttacagGAGAAGTGGTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACC
EST: AAACTCAAGAAACATTGCGTACATCTGCTTTTCCAAGCACTCATGTGAAG GAGAAGTGGTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACCEST: gi|162194954|gb|FC369032.1|FC369032
genomic: AAACTCAAGAAACATTGCGTACATCTGCTTTTCCAAGCACTCATGTGAAGgtatgctatg ... ttatttacagGAGAAGTGGTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACC
EST: AAACTCAAGAAACATTGCGTACATCTGCTTTTCCAAGCACTCATGTGAAG GAGAAGTGGTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACCEST: gi|162194953|gb|FC369031.1|FC369031
genomic: AAACTCAAGAAACATTGCGTACATCTGCTTTTCCAAGCACTCATGTGAAGgtatgctatg ... ttatttacagGAGAAGTGGTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACC
EST: ACATCTGCTTTTCCAAGCACTCATGTGAAG GAGAAGTGGTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACCEST: gi|162176120|gb|FC351888.1|FC351888
genomic: ACATCTGCTTTTCCAAGCACTCATGTGAAGgtatgctatg ... ttatttacagGAGAAGTGGTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACC
EST: AAACTCAAGAAACATTGCGTACATCTGCTTTTCCAAGCACTCATGTGAAG GAGAAGTGGTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACCEST: gi|37829185|gb|BJ587197.1|BJ587197
genomic: AAACTCAAGAAACATTGCGTACATCTGCTTTTCCAAGCACTCATGTGAAGgtatgctatg ... ttatttacagGAGAAGTGGTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACC
EST: TTCCAAGCACTCATGTGAAG GAGAAGTGGTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACC
genomic: TTCCAAGCACTCATGTGAAGgtatgctatg ... ttatttacagGAGAAGTGGTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACC
cgttaattttttggtcacgataattctgtactgaattggttcgcattatttacagGAGAAGTGGTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACCGTCTCATAAATCCCTTTCGCTGCAGTCAAGTAGCTTAAATGACTTGTCG
cgttaat putative branch site (score: 17)
attatttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctatggtcgatttgcgcgtcgaatgcaaaaatattgtaggttgtcgtatcgattcccgttaattttttggtcacgataattctgtactgaattggttcgcattatttacagGAGAAGTGGTCGAAGAATCTTTATATTGCAGCTGTAAGTTACGGGCGGACCGTCTCATAAATCCCTTTCGCTGCAGTCAAGTAGCTTAAATGACTTGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG