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...tgaactgaacatagtttcctctgaaaactagccacttttctcagcatcctcgatcaacatatttattcgattgttgagctaactgtgattcgttttgcagATATCATTACAACGTGGCTGATTCTCGCCTTACGCAGCATGTGGAAAAGGGTAATGAAGATGGCCTGTATATAAGCAGTGTGGCTTCTTGTACAAATCTG
species | Physcomitrella patens |
transcript | PP1S66_174V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCTACTCAATGGATTACCGTTTATAATGCTCGGCGACCTATGAAGCAGAG ATATCATTACAACGTGGCTGATTCTCGCCTTACGCAGCATGTGGAAAAGGGEST: gi|162194954|gb|FC369032.1|FC369032
genomic: GCTACTCAATGGATTACCGTTTATAATGCTCGGCGACCTATGAAGCAGAGgtaattgcaa ... cgttttgcagATATCATTACAACGTGGCTGATTCTCGCCTTACGCAGCATGTGGAAAAGGG
EST: GCTACTCAATGGATTACCGTTTATAATGCTCGGCGACCTATGAAGCAGAG ATATCATTACAACGTGGCTGATTCTCGCCTTACGCAGCATGTGGAAAAGGGEST: gi|162199595|gb|FC373247.1|FC373247
genomic: GCTACTCAATGGATTACCGTTTATAATGCTCGGCGACCTATGAAGCAGAGgtaattgcaa ... cgttttgcagATATCATTACAACGTGGCTGATTCTCGCCTTACGCAGCATGTGGAAAAGGG
EST: GCTACTCAATGGATTACCGTTTATAATGCTCGGCGACCTATGAAGCAGAG ATATCATTACAACGTGGCTGATTCTCGCCTTACGCAGCATGTGGAAAAGGG
genomic: GCTACTCAATGGATTACCGTTTATAATGCTCGGCGACCTATGAAGCAGAGgtaattgcaa ... cgttttgcagATATCATTACAACGTGGCTGATTCTCGCCTTACGCAGCATGTGGAAAAGGG
atcctcgatcaacatatttattcgattgttgagctaactgtgattcgttttgcagATATCATTACAACGTGGCTGATTCTCGCCTTACGCAGCATGTGGAAAAGGGTAATGAAGATGGCCTGTATATAAGCAGTGTGGCTTCTTGTACAAATCTG
agctaac putative branch site (score: 16)
ttcgtttt putative PPT
atcaacatatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaactgaacatagtttcctctgaaaactagccacttttctcagcatcctcgatcaacatatttattcgattgttgagctaactgtgattcgttttgcagATATCATTACAACGTGGCTGATTCTCGCCTTACGCAGCATGTGGAAAAGGGTAATGAAGATGGCCTGTATATAAGCAGTGTGGCTTCTTGTACAAATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - ctgaaca