1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGAGGAAGGAGGATGTATGAGCTTAGTGTCAAGCGAGGGGTGGCGTTTGCAGTAATTAGAGGCCCTTGAGGTGGATGTAAGTAATATAATCGATTCACGgtaagtgggtgtgtgagagagagaggggaagagctgggaaaatgagagcgtcggaagcctagggggtgcctgttgaatggggtgagatgggatttgcggg...
species | Physcomitrella patens |
transcript | PP1S62_186V6.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGTAATTAGAGGCCCTTGAGGTGGATGTAAGTAATATAATCGATTCACG CCGGAGTTATACAAAATTCCGACCTTTCGCAAGTTGCTTTGATTCCTCCGTEST: gi|100444630|gb|BY982459.1|BY982459
genomic: CAGTAATTAGAGGCCCTTGAGGTGGATGTAAGTAATATAATCGATTCACGgtaagtgggt ... ggtggtgcagCCGGAGTTATACAAAATTCCGACCTTTCGCAAGTTGCTTTGATTCCTCCGT
EST: ATAATCGATTCACG CCGGAGTTATACAAAATTCCGACCTTTCGCAAGTTGCTTTGATTCCTCCGT
genomic: ATAATCGATTCACGgtaagtgggt ... ggtggtgcagCCGGAGTTATACAAAATTCCGACCTTTCGCAAGTTGCTTTGATTCCTCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGGAAGGAGGATGTATGAGCTTAGTGTCAAGCGAGGGGTGGCGTTTGCAGTAATTAGAGGCCCTTGAGGTGGATGTAAGTAATATAATCGATTCACGgtaagtgggtgtgtgagagagagaggggaagagctgggaaaatgagagcgtcggaagcctagggggtgcctgttgaatggggtgagatgggatttgcggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA