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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgtggggcctggtgcgactggtggcgggtcgaccttgattgttgattaattacggactaaggctggtatcggctaatgcattggaagtgtggtggtgcagCCGGAGTTATACAAAATTCCGACCTTTCGCAAGTTGCTTTGATTCCTCCGTCACGTCTGGGGCCGCCAGCAGGCCACCATGCGTATTCGGAAGCGGCCCC

Basic information

species Physcomitrella patens
transcript PP1S62_186V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18365452|gb|BJ197528.1|BJ197528
EST:     CAGTAATTAGAGGCCCTTGAGGTGGATGTAAGTAATATAATCGATTCACG                         CCGGAGTTATACAAAATTCCGACCTTTCGCAAGTTGCTTTGATTCCTCCGT
genomic: CAGTAATTAGAGGCCCTTGAGGTGGATGTAAGTAATATAATCGATTCACGgtaagtgggt ... ggtggtgcagCCGGAGTTATACAAAATTCCGACCTTTCGCAAGTTGCTTTGATTCCTCCGT
EST: gi|100444630|gb|BY982459.1|BY982459
EST:     ATAATCGATTCACG                         CCGGAGTTATACAAAATTCCGACCTTTCGCAAGTTGCTTTGATTCCTCCGT
genomic: ATAATCGATTCACGgtaagtgggt ... ggtggtgcagCCGGAGTTATACAAAATTCCGACCTTTCGCAAGTTGCTTTGATTCCTCCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaattacggactaaggctggtatcggctaatgcattggaagtgtggtggtgcagCCGGAGTTATACAAAATTCCGACCTTTCGCAAGTTGCTTTGATTCCTCCGTCACGTCTGGGGCCGCCAGCAGGCCACCATGCGTATTCGGAAGCGGCCCC
                         ggctaat  putative branch site (score: 3)