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gtatatgaataagggtatatttcctgcggttgcccaggtggtcacagcaaattcgtggagattgtagaactcatcctctttatccagagttgtcatacatatacgtgttgtcgtttcagGGATTGGCCTGTGGAGAAGTTGAAGGAGGTTAAAGTAGCAGATGCTTTGAAGCATCCCAACTGGAGCATGGGCCGCAAAATTACGGTTGATTCTGCCACG
species | Physcomitrella patens |
transcript | PP1S62_157V6.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CGGATTATCCTCACAGCATCCGGAGGTGCATTCAG GGATTGGCCTGTGGAGAAGTTGAAGGAGGTTAAAGTAGCAGATGCTTTGAAEST: gi|162250938|gb|FC425760.1|FC425760
genomic: CGGATTATCCTCACAGCATCCGGAGGTGCATTCAGgtatatgaat ... gtcgtttcagGGATTGGCCTGTGGAGAAGTTGAAGGAGGTTAAAGTAGCAGATGCTTTGAA
EST: GAAGGTGGATTGAGGCGGATTATCCTCACAGCATCCGGAGGTGCATTCAG GGATTGGCCTGTGGAGAAGTTGAAGGAGGTTAAAGTAGCAGATGCTTTGAAEST: gi|162272851|gb|FC448007.1|FC448007
genomic: GAAGGTGGATTGAGGCGGATTATCCTCACAGCATCCGGAGGTGCATTCAGgtatatgaat ... gtcgtttcagGGATTGGCCTGTGGAGAAGTTGAAGGAGGTTAAAGTAGCAGATGCTTTGAA
EST: GAAGGTGGATTGAGGCGGATTATCCTCACAGCATCCGGAGGTGCATTCAG GGATTGGCCTGTGGAGAAGTTGAAGGAGGTTAAAGTAGCAGATGCTTTGAAEST: gi|100442899|gb|BY963394.1|BY963394
genomic: GAAGGTGGATTGAGGCGGATTATCCTCACAGCATCCGGAGGTGCATTCAGgtatatgaat ... gtcgtttcagGGATTGGCCTGTGGAGAAGTTGAAGGAGGTTAAAGTAGCAGATGCTTTGAA
EST: GAAGGTGGATTGAGGCGGATTATCCTCACAGCATCCGGAGGTGCATTCAG GGATTGGCCTGTGGAGAAGTTGAAGGAGGTTAAAGTAGCAGATGCTTTGAAEST: gi|162163958|gb|FC339868.1|FC339868
genomic: GAAGGTGGATTGAGGCGGATTATCCTCACAGCATCCGGAGGTGCATTCAGgtatatgaat ... gtcgtttcagGGATTGGCCTGTGGAGAAGTTGAAGGAGGTTAAAGTAGCAGATGCTTTGAA
EST: GAAGGTGGATTGAGGCGGATTATCCTCACAGCATCCGGAGGTGCATTCAG GGATTGGCCTGTGGAGAAGTTGAAGGAGGTTAAAGTAGCAGATGCTTTGAA
genomic: GAAGGTGGATTGAGGCGGATTATCCTCACAGCATCCGGAGGTGCATTCAGgtatatgaat ... gtcgtttcagGGATTGGCCTGTGGAGAAGTTGAAGGAGGTTAAAGTAGCAGATGCTTTGAA
tagaactcatcctctttatccagagttgtcatacatatacgtgttgtcgtttcagGGATTGGCCTGTGGAGAAGTTGAAGGAGGTTAAAGTAGCAGATGCTTTGAAGCATCCCAACTGGAGCATGGGCCGCAAAATTACGGTTGATTCTGCCACG
tcgtttc CT-rich tract
atacatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatgaataagggtatatttcctgcggttgcccaggtggtcacagcaaattcgtggagattgtagaactcatcctctttatccagagttgtcatacatatacgtgttgtcgtttcagGGATTGGCCTGTGGAGAAGTTGAAGGAGGTTAAAGTAGCAGATGCTTTGAAGCATCCCAACTGGAGCATGGGCCGCAAAATTACGGTTGATTCTGCCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA