1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aagtcactagtattttggtggagatgaagcgatatatacgatcattttgttaagttagtgctataaggttctatagcttgggttttcttctgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG
species | Physcomitrella patens |
transcript | PP1S62_157V6.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCCGAAACCTATCTCCCTTATCGGATCTACTGGCTCTATCGGTACACAG ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTGEST: gi|18360285|gb|BJ192347.1|BJ192347
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAG ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTGEST: gi|162272851|gb|FC448007.1|FC448007
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAG ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTGEST: gi|100442899|gb|BY963394.1|BY963394
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: CGGATCGACTGGCTCTATCGGTACACAG ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTGEST: gi|162208298|gb|FC384402.1|FC384402
genomic: CGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: GTCCGAAACCTATCTCCCTTATCGGATCTACTGGCTCTATCGGTACACAG ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
tttgttaagttagtgctataaggttctatagcttgggttttcttctgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG
ttttcttctgtgtt CT-rich tract
taagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtcactagtattttggtggagatgaagcgatatatacgatcattttgttaagttagtgctataaggttctatagcttgggttttcttctgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT