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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactctcatgtttgacatgtagattttttttccaaaccatttgtgaataggtcatagttcaccaagagctcagaatgtagacttttgcttttgtcacattggttatacaattgctgacttctgggatgatgtctgtatcctctgttttatagGACTCTTCAGTAATTGCTCAATTAGGCTGGCCAGACATGCGGCTTCCCATCCTGTACACCATGTCGTGGCCAGAGCGCATTTCCTGTTCAGAGAAGACCT

Basic information

species Physcomitrella patens
transcript PP1S62_157V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162203496|gb|FC380412.1|FC380412
EST:     ATATTGTTGTCCATCCCCAATCAATCATTCATTCCATGGTGGAGACACAG                         GACTCTTCAGTAATTGCTCAATTAGGCTGGCCAGACATGCGGCTTCCCATC
genomic: ATATTGTTGTCCATCCCCAATCAATCATTCATTCCATGGTGGAGACACAGgtaactctca ... tgttttatagGACTCTTCAGTAATTGCTCAATTAGGCTGGCCAGACATGCGGCTTCCCATC
EST: gi|162272850|gb|FC448006.1|FC448006
EST:     TGTTGTCCATCCCC-ATNCAATCATTCATTCCATGGTGGAGACACAG                         GACTCTTCAGTAATTGCTCAATTAGGCTGGCCAGACATGCGGCTTCCCATC
genomic: TGTTGTCCATCCCCAAT-CAATCATTCATTCCATGGTGGAGACACAGgtaactctca ... tgttttatagGACTCTTCAGTAATTGCTCAATTAGGCTGGCCAGACATGCGGCTTCCCATC
EST: gi|162185513|gb|FC361237.1|FC361237
EST:     ATATTGTTGTCCATCCCCAATCAATCATTCATTCCATGGTGGAGACACAG                         GACTCTTCAGTAATTGCTCAATTAGGCTGGCCAGACATGCGGCTTCCCATC
genomic: ATATTGTTGTCCATCCCCAATCAATCATTCATTCCATGGTGGAGACACAGgtaactctca ... tgttttatagGACTCTTCAGTAATTGCTCAATTAGGCTGGCCAGACATGCGGCTTCCCATC
EST: gi|162163958|gb|FC339868.1|FC339868
EST:     ATATTGTTGTCCATCCCCAATCAATCATTCATTCCATGGTGGAGACACAG                         GACTCTTCAGTAATTGCTCAA
genomic: ATATTGTTGTCCATCCCCAATCAATCATTCATTCCATGGTGGAGACACAGgtaactctca ... tgttttatagGACTCTTCAGTAATTGCTCAA
EST: gi|162179791|gb|FC356382.1|FC356382
EST:     CCATCCCCAATC-ATCATTTCATTCCATGGTGGAGACACAG                         GACTCTTCAGTAATTGCTCAATTAGGCTGGCCAGACATGCGGCTTCCCATC
genomic: CCATCCCCAATCAATCA-TTCATTCCATGGTGGAGACACAGgtaactctca ... tgttttatagGACTCTTCAGTAATTGCTCAATTAGGCTGGCCAGACATGCGGCTTCCCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attggttatacaattgctgacttctgggatgatgtctgtatcctctgttttatagGACTCTTCAGTAATTGCTCAATTAGGCTGGCCAGACATGCGGCTTCCCATCCTGTACACCATGTCGTGGCCAGAGCGCATTTCCTGTTCAGAGAAGACCT
              tgctgac  putative branch site (score: 2)
                                        tcctctgtttt  putative PPT
     ttatacaatt  TA-rich tract