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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGCTTGGCCTGGAAGGGCTGTCATAGAAGACGTTAAGATCAGAAACGGTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatatactgttctggtgcatactggtccttgcataatacgttacagttccttatttcctgacaagagaatacatttgaataatctacaatgaatta...

Basic information

species Physcomitrella patens
transcript PP1S62_157V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162250938|gb|FC425760.1|FC425760
EST:     GTCCGAAACCTATCTCCCTTATCGGATCTACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|100442899|gb|BY963394.1|BY963394
EST:     CGGATCGACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: CGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|162272851|gb|FC448007.1|FC448007
EST:     GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|162208298|gb|FC384402.1|FC384402
EST:     GTCCGAAACCTATCTCCCTTATCGGATCTACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG