Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162185848|gb|FC362404.1|FC362404EST: CATTCTGTCCTCCTCCTTGCTCTTTTGGGGAGAATTCCTGCTGAGGTTTT GCGGTTGCTCTAGGTCTTGCAGTCAACCCTGGACGTTATTGTGCTTCGAAG
genomic: CATTCTGTCCTCCTCCTTGCTCTTTTGGGGAGAATTCCTGCTGAGGTTTTgtaagatttg ... gaattttcagGCGGTTGCTCTAGGTCTTGCAGTCAACCCTGGACGTTATTGTGCTTCGAAG
EST:
gi|208373820|gb|DC936591.1|DC936591EST: CATTCTGTCCTCCTCCTTGCTCTTTTGGGGAGAATTCCTGCTGA------ --GGTT--T-T--GTCTTGCAGTCAACCCTGGACGTTATTGTGCTTCGAAG
genomic: CATTCTGTCCTCCTCCTTGCTCTTTTGGGGAGAATTCCTGCTGAGGTTTTgtaagatttg ... gaattttcagGCGGTTGCTCTAGGTCTTGCAGTCAACCCTGGACGTTATTGTGCTTCGAAG
EST:
gi|67571895|gb|BJ944719.1|BJ944719EST: CATTCTGTCCTCCTCCTTGCTCTTTTGGGGAGAATTCCTGCTGAGGTTTT GCGGTTGCTCTAGGTCTTGCAGTCAACCCTGGACGTTATTGTGCTTCGAAG
genomic: CATTCTGTCCTCCTCCTTGCTCTTTTGGGGAGAATTCCTGCTGAGGTTTTgtaagatttg ... gaattttcagGCGGTTGCTCTAGGTCTTGCAGTCAACCCTGGACGTTATTGTGCTTCGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACAGCCCGTTTTCTCTATGTTATGTTACTTTCAAATGCTTTTGTTGCCCCATTCTGTCCTCCTCCTTGCTCTTTTGGGGAGAATTCCTGCTGAGGTTTTgtaagatttgcacccatctcacatttctgtctgttggagtggtcacatttgttcgtgtctttttactgttgcattttttcgttaatttgatcccgtgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA