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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agactaatggtgaagtaggaatgccgatctattttcagtttttgcagtttggctgcgacctgaagttctatgttttcaaagttcctctctgaattttcagGCGGTTGCTCTAGGTCTTGCAGTCAACCCTGGACGTTATTGTGCTTCGAAGCGAAGTCTATCCTGGTGCCTAGAAATTGAGTAGTTTCCTCCCTGAGGGA

Basic information

species Physcomitrella patens
transcript PP1S62_130V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162185848|gb|FC362404.1|FC362404
EST:     CATTCTGTCCTCCTCCTTGCTCTTTTGGGGAGAATTCCTGCTGAGGTTTT                         GCGGTTGCTCTAGGTCTTGCAGTCAACCCTGGACGTTATTGTGCTTCGAAG
genomic: CATTCTGTCCTCCTCCTTGCTCTTTTGGGGAGAATTCCTGCTGAGGTTTTgtaagatttg ... gaattttcagGCGGTTGCTCTAGGTCTTGCAGTCAACCCTGGACGTTATTGTGCTTCGAAG
EST: gi|208373820|gb|DC936591.1|DC936591
EST:     CATTCTGTCCTCCTCCTTGCTCTTTTGGGGAGAATTCCTGCTGA------                         --GGTT--T-T--GTCTTGCAGTCAACCCTGGACGTTATTGTGCTTCGAAG
genomic: CATTCTGTCCTCCTCCTTGCTCTTTTGGGGAGAATTCCTGCTGAGGTTTTgtaagatttg ... gaattttcagGCGGTTGCTCTAGGTCTTGCAGTCAACCCTGGACGTTATTGTGCTTCGAAG
EST: gi|67571895|gb|BJ944719.1|BJ944719
EST:     CATTCTGTCCTCCTCCTTGCTCTTTTGGGGAGAATTCCTGCTGAGGTTTT                         GCGGTTGCTCTAGGTCTTGCAGTCAACCCTGGACGTTATTGTGCTTCGAAG
genomic: CATTCTGTCCTCCTCCTTGCTCTTTTGGGGAGAATTCCTGCTGAGGTTTTgtaagatttg ... gaattttcagGCGGTTGCTCTAGGTCTTGCAGTCAACCCTGGACGTTATTGTGCTTCGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttggctgcgacctgaagttctatgttttcaaagttcctctctgaattttcagGCGGTTGCTCTAGGTCTTGCAGTCAACCCTGGACGTTATTGTGCTTCGAAGCGAAGTCTATCCTGGTGCCTAGAAATTGAGTAGTTTCCTCCCTGAGGGA
                                    ttcctctctg  CT-rich tract
                       tatgtttt  TA-rich tract