1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAAGCGGAACTTCAAACCATTGATTCCTCAAGATGATGAAGATGAGGACATTTTAGATATGGATGATGTTGGAGATGACAATTTGGTGGAGACAGATGATgtaagtttagtttgggggttgtttgaatcttgcggaggatatgcgaatctattgtggattgttttttgaagtgcaacagctaactataagattggattgaacag
species | Physcomitrella patens |
transcript | PP1S62_116V6.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTTTAGATATGGATGATGTTGGAGATGACAATTTGGTGGAGACAGATGAT AGCACATTACAACCGTACCTTGTAGCTCACGAGCCGGAGGATGATCACATTEST: gi|162164443|gb|FC341569.1|FC341569
genomic: TTTTAGATATGGATGATGTTGGAGATGACAATTTGGTGGAGACAGATGATgtaagtttag ... gattgaacagAGCACATTACAACCGTACCTTGTAGCTCACGAGCCGGAGGATGATCACATT
EST: TTTTAGATATGGATGATGTTGGAGATGACAATTTGGTGGAGACAGATGAT AGCACATTACAACCGTACCTTGTAGCTCACGAG
genomic: TTTTAGATATGGATGATGTTGGAGATGACAATTTGGTGGAGACAGATGATgtaagtttag ... gattgaacagAGCACATTACAACCGTACCTTGTAGCTCACGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCGGAACTTCAAACCATTGATTCCTCAAGATGATGAAGATGAGGACATTTTAGATATGGATGATGTTGGAGATGACAATTTGGTGGAGACAGATGATgtaagtttagtttgggggttgtttgaatcttgcggaggatatgcgaatctattgtggattgttttttgaagtgcaacagctaactataagattggattgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG