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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacgttaccattggtttcggtcgaaggagattactgattttgtcagattgtttcattgtgtgtgtgttcacgtctcaaacgcagctcttgattctcgtagGTGGCTGGATGAAAAGAATTGCAGTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTG

Basic information

species Physcomitrella patens
transcript PP1S62_116V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18346453|gb|BJ178496.1|BJ178496
EST:     ATTTCCTGCTTGCGTCTCTCTCTGCGCACCGTCTTCTTCTGCTTCTGCAG                         GTGGCTGGATGAAAAGAATTGCAGTACGAATTTCAACACTTCTTCCACACA
genomic: ATTTCCTGCTTGCGTCTCTCTCTGCGCACCGTCTTCTTCTGCTTCTGCAGgtatacaaac ... attctcgtagGTGGCTGGATGAAAAGAATTGCAGTACGAATTTCAACACTTCTTCCACACA
EST: gi|162165648|gb|FC341487.1|FC341487
EST:     ATTTCCTGCTTGCGTCTCTCTCTGCGCACCGTCTTCTTCTGCTTCTGCAGCTCTTGATTCTCGTAG          
genomic: ATTTCCTGCTTGCGTCTCTCTCTGCGCACCGTCTTCTTCTG---CT-----TC-TG-----C--AGgtatacaaac


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgtttcattgtgtgtgtgttcacgtctcaaacgcagctcttgattctcgtagGTGGCTGGATGAAAAGAATTGCAGTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTG
                                        tcttgat  putative branch site (score: 4)
                                              ttctcgt  CT-rich tract
     tttcatt  TA-rich tract