Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162213875|gb|FC389866.1|FC389866EST: GTCCTGCTTCGAGTACATTTCACGTGTTTGCACCCGCTCTATATGCTTTG GCCTGCTGCTTTCATGTTTCTGAGCAAAAGCCAGCCGGAATTTGCTTGGCC
genomic: GTCCTGCTTCGAGTACATTTCACGTGTTTGCACCCGCTCTATATGCTTTGgtcagtgtcc ... tgttgcacagGCCTGCTGCTTTCATGTTTCTGAGCAAAAGCCAGCCGGAAATTGCTTGGCC
EST:
gi|208365094|gb|DC947330.1|DC947330EST: GTCCTGCTTCGAGTACATTTCACGTGTTTGCACCCGCTCTATATGCTTTG GCCTGCTGCTTTCATGTTTCTGAGCAAAAGCCAGCCGGAAATTGCTTGGCC
genomic: GTCCTGCTTCGAGTACATTTCACGTGTTTGCACCCGCTCTATATGCTTTGgtcagtgtcc ... tgttgcacagGCCTGCTGCTTTCATGTTTCTGAGCAAAAGCCAGCCGGAAATTGCTTGGCC
EST:
gi|37851706|gb|BJ609714.1|BJ609714EST: GTCCTGCTTCGAGTACATTTCACGTGTTTGCACCCGCTCTATATGCTTTG GCCTGCTGCTTTCATGTTTCTGAGCAAAAGCCAGCCGGAAATTGCTTGGCC
genomic: GTCCTGCTTCGAGTACATTTCACGTGTTTGCACCCGCTCTATATGCTTTGgtcagtgtcc ... tgttgcacagGCCTGCTGCTTTCATGTTTCTGAGCAAAAGCCAGCCGGAAATTGCTTGGCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acggttgactttggttagtcacactgatgagagagaggctgtggttgttgcacagGCCTGCTGCTTTCATGTTTCTGAGCAAAAGCCAGCCGGAAATTGCTTGGCCGCTAATGACCCGTTGGTACGCATGCTACCTAAGTAAGGGTCAGCTATCG
cactgat putative branch site (score: 3)
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagtgtccgtttctggtatatactaccatatatcagagatttttttttcttcttaaaagccagatagagatccaaaaagtgtttccacatgacggttgactttggttagtcacactgatgagagagaggctgtggttgttgcacagGCCTGCTGCTTTCATGTTTCTGAGCAAAAGCCAGCCGGAAATTGCTTGGCCGCTAATGACCCGTTGGTACGCATGCTACCTAAGTAAGGGTCAGCTATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT