Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGCGTTGCATACGTTACTGTCCACACTTGCTAGTAACTACCACCATGTTACCACCATTGGTAGACTGTGCCATGACTGGCATAACTATTCAACACAGgtacttttattggctattaagttatttgatgtttatagttatctgtggcaacattcttctccacttttgtgtgtaagagatgtcgtgaatatttgcactt...

Basic information

species Physcomitrella patens
transcript PP1S61_322V6.1
intron # 21
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162196273|gb|FC374355.1|FC374355
EST:     TTACCACCATTGGTAGACTGTGCCATGACTGGCATAACTATTCAACACAG                         GGAGGCATGTCGTTCAATTTTGACCTTTTTCCAAGATATCTTGGATGTACC
genomic: TTACCACCATTGGTAGACTGTGCCATGACTGGCATAACTATTCAACACAGgtacttttat ... atatgtgcagGGAGGCATGTCGTTCAATTTTGACCTTTTTCCAAGATATCTTGGATGTACC
EST: gi|162196274|gb|FC374356.1|FC374356
EST:     TTACCACCATTGGTAGACTGTGCCATGACTGGCATAACTATTCAACACAG                         GGAGGCATGTCGTTCAATTTTGACCTTTTTCCAAGATATCTTGGATGTACC
genomic: TTACCACCATTGGTAGACTGTGCCATGACTGGCATAACTATTCAACACAGgtacttttat ... atatgtgcagGGAGGCATGTCGTTCAATTTTGACCTTTTTCCAAGATATCTTGGATGTACC
EST: gi|162244564|gb|FC420111.1|FC420111
EST:     TTACCACCATTGGTAGACTGTGCCATGACTGGCATAACTATTCAACACAG                         GGAGGCATGTCGTTCAATTTTGACCTTTTTCCAAGATATCTTGGATGTACC
genomic: TTACCACCATTGGTAGACTGTGCCATGACTGGCATAACTATTCAACACAGgtacttttat ... atatgtgcagGGAGGCATGTCGTTCAATTTTGACCTTTTTCCAAGATATCTTGGATGTACC