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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataatttcagagtcctcctggtttgacttatttagtgctatatttctggacactctttgactgttttagatgtcaagtgttggttgcatcttagtttagggtcgattgctattggaacattaactatttttgcacgtgtgcgtacagGACTTTACTGCGCTACCTGATGTTGCTGATGACTGCTTCTTATTAGCATCGCGTTGCATACGTTACTGTCCACACTTGCTAGTAACTACCACCATGTTAC

Basic information

species Physcomitrella patens
transcript PP1S61_322V6.1
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162196273|gb|FC374355.1|FC374355
EST:     TGATATCAGTTCTTTTTGGACAATCGATATCGATGTTGACAACTATTAAG                         GACTTTACTGCGCTACCTGATGTTGCTGATGACTGCTTCTTATTAGCATCG
genomic: TGATATCAGTTCTTTTTGGACAATCGATATCGATGTTGACAACTATTAAGgtaataattt ... gtgcgtacagGACTTTACTGCGCTACCTGATGTTGCTGATGACTGCTTCTTATTAGCATCG
EST: gi|162196274|gb|FC374356.1|FC374356
EST:     TGATATCAGTTCTTTTTGGACAATCGATATCGATGTTGACAACTATTAAG                         GACTTTACTGCGCTACCTGATGTTGCTGATGACTGCTTCTTATTAGCATCG
genomic: TGATATCAGTTCTTTTTGGACAATCGATATCGATGTTGACAACTATTAAGgtaataattt ... gtgcgtacagGACTTTACTGCGCTACCTGATGTTGCTGATGACTGCTTCTTATTAGCATCG
EST: gi|162244564|gb|FC420111.1|FC420111
EST:     TGATATCAGTTCTTTTTGGACAATCGATATCGATGTTGACAACTATTAAG                         GACTTTACTGCGCTACCTGATGTTGCTGATGACTGCTTCTTATTAGCATCG
genomic: TGATATCAGTTCTTTTTGGACAATCGATATCGATGTTGACAACTATTAAGgtaataattt ... gtgcgtacagGACTTTACTGCGCTACCTGATGTTGCTGATGACTGCTTCTTATTAGCATCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttagggtcgattgctattggaacattaactatttttgcacgtgtgcgtacagGACTTTACTGCGCTACCTGATGTTGCTGATGACTGCTTCTTATTAGCATCGCGTTGCATACGTTACTGTCCACACTTGCTAGTAACTACCACCATGTTAC
                         cattaac  putative branch site (score: 2)
                       aacattaactattttt  TA-rich tract