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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacttccagacgaagtgagtaatgtgatttttatttataagagggagtttctgtaaatgtagcctctgcaatcctgggcactttgaacttgaacgttttgtttataattttcaacacatgattctattgttgcagGTGGGACAATGTTTCAGCTCGCTGGTATGAGGCAACAGCTGCAAGGCGAGCTTGTACAGAAAGGTTTTATCAAAATGGAGCCGCATCCATGCAGTTTGAA

Basic information

species Physcomitrella patens
transcript PP1S61_315V6.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162231300|gb|FC407048.1|FC407048
EST:     ACGAGTCAACGGCCAGGAGAGTAATTTCTGTTCAAGATACTTTGTGTCAN                         GTGGGACAATGTTTCAGCTCGCTGGTATGAGGCAACAGCT
genomic: ACGAGTCAACGGCCAGGAGAGTAATTTCTGTTCAAGATACTTTGTGTCAGgtacacttcc ... attgttgcagGTGGGACAATGTTTCAGCTCGCTGGTATGAGGCAACAGCT
EST: gi|162173554|gb|FC350128.1|FC350128
EST:     ACGAGTCAACGGCCAGGAGAGTAATTTCTGTTCAAGATACTTTGTGTCAG                         GTGGGACAATGTTTCAGCTCGCTGGTATGAGGCAACAGCTGCAAGGCGAGC
genomic: ACGAGTCAACGGCCAGGAGAGTAATTTCTGTTCAAGATACTTTGTGTCAGgtacacttcc ... attgttgcagGTGGGACAATGTTTCAGCTCGCTGGTATGAGGCAACAGCTGCAAGGCGAGC
EST: gi|162271583|gb|FC447468.1|FC447468
EST:     ACGAGTCAACGGCCAGGAGAGTAATTTCTGTTCAAGATACTTTGTGTCAG                         GTGGGACAATGTTTCAGCTCGCTGGTATGAGGCAACAGCTGCAAGGCGAGC
genomic: ACGAGTCAACGGCCAGGAGAGTAATTTCTGTTCAAGATACTTTGTGTCAGgtacacttcc ... attgttgcagGTGGGACAATGTTTCAGCTCGCTGGTATGAGGCAACAGCTGCAAGGCGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgaacttgaacgttttgtttataattttcaacacatgattctattgttgcagGTGGGACAATGTTTCAGCTCGCTGGTATGAGGCAACAGCTGCAAGGCGAGCTTGTACAGAAAGGTTTTATCAAAATGGAGCCGCATCCATGCAGTTTGAA
                                         ttctatt  CT-rich tract
               ttttgtttataatttt  TA-rich tract