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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagcatgcacatgaatgatgctgatcgtatgatgttattgcggatttctctttttccgcgttcatatcacaattggtgtagcaattttcttatttatcatgagcaatctgtctgtccttaatgcttatgaagttgttttctctgcaatgccctctaatagcagggttgatgtttttgttactgttcgttgatcagGTAAAACTGTATGAACCTCATGGACGAATTGCGGAGTTTATTTTAAGAGCGCTTGATCCACCTCTAGAAATAGCAGTACGGAATGCGGTGACACTGCTAC

Basic information

species Physcomitrella patens
transcript PP1S61_315V6.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162231300|gb|FC407048.1|FC407048
EST:     TTCAACTTCCTGAAATCAAGCGAACACCTCTTGAGGAACTTTGCCTGCAG                         GTAAAACTGTATGAACCTCATGGACGAATTGCGGAGTTTATTTTAAGAGCG
genomic: TTCAACTTCCTGAAATCAAGCGAACACCTCTTGAGGAACTTTGCCTGCAGgtcagcatgc ... cgttgatcagGTAAAACTGTATGAACCTCATGGACGAATTGCGGAGTTTATTTTAAGAGCG
EST: gi|162173554|gb|FC350128.1|FC350128
EST:     CTTTGCCTGCAG                         GTAAAACTGTATGAACCTCATGGACGAATTGCGGAGTTTATTTTAAGAGCG
genomic: CTTTGCCTGCAGgtcagcatgc ... cgttgatcagGTAAAACTGTATGAACCTCATGGACGAATTGCGGAGTTTATTTTAAGAGCG
EST: gi|162271583|gb|FC447468.1|FC447468
EST:     TTCAACTTCCTGAAATCAAGCGAACACCTCTTGAGGAACTTTGCCTGCAG                         GTAAAACTGTATGAACCTCATGGACGAATTGCGGAGTTTATTTTAAGAGCG
genomic: TTCAACTTCCTGAAATCAAGCGAACACCTCTTGAGGAACTTTGCCTGCAGgtcagcatgc ... cgttgatcagGTAAAACTGTATGAACCTCATGGACGAATTGCGGAGTTTATTTTAAGAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgcaatgccctctaatagcagggttgatgtttttgttactgttcgttgatcagGTAAAACTGTATGAACCTCATGGACGAATTGCGGAGTTTATTTTAAGAGCGCTTGATCCACCTCTAGAAATAGCAGTACGGAATGCGGTGACACTGCTAC
                               tttttgtta  TA-rich tract