1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCCCTACTTTGAGTCATCAGCCAAGGAAGACTTCAACGTGGATGCTGCATTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagtcttggtgttatcagtgaccatcgcgtttgtgaagggagtggaatgtggagacgcaatggaactcgctgagtggaggagtggtctgactgagtgtgatgtttggcatgtggttgcag
species | Physcomitrella patens |
transcript | PP1S61_292V6.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT CTACCTGCNTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|37832980|gb|BJ590992.1|BJ590992
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagCTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACTCATTGAAGAACGAGACGGAGGAGGAAAT CTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|162233790|gb|FC410056.1|FC410056
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagCTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|162171581|gb|FC347522.1|FC347522
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagCTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT CTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|208397058|gb|DC928901.1|DC928901
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagCTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|162151879|gb|FC328125.1|FC328125
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagCTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT CTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|208370838|gb|DC948291.1|DC948291
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagCTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|208362282|gb|DC954528.1|DC954528
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagCTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT CTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagCTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCCTACTTTGAGTCATCAGCCAAGGAAGACTTCAACGTGGATGCTGCATTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagtcttggtgttatcagtgaccatcgcgtttgtgaagggagtggaatgtggagacgcaatggaactcgctgagtggaggagtggtctgactgagtgtgatgtttggcatgtggttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA