Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgtgtctgttcgtcttatttcatcttttgaatctccactgtgaaagttttggagaagattttcgagagctgtgtgtttggtacttcacttcggggttagggtttcgttgatttggctcgttggatgggttaggagacgagctgagactaaacatggattggtgtggggtccgtgttttgttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGCTCAGTTGTGGGCTGACAAGTCCTACAAGAAATCTCACTTGGGTAACGAG

Basic information

species Physcomitrella patens
transcript PP1S61_268V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S61_268V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ31369 (Selaginella moellendorffii), 3'ss of exon 1
gtatgttgtgtctgttcgtcttatttcatcttttgaatctccactgtgaaagttttggagaagattttcgagagctgtgtgtttggtacttcacttcggggttagggtttcgttgatttggctcgttggatgggttaggagacgagctgagactaaacatggattggtgtggggtccgtgttttgttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGCTCAGTTGTGGGCTGACAAGTCCTACAAGAAATCTCACTTGGGTAACGAG
                                                                                                                                                |||     ||| |     |    |||  | |||| |   ||||| | ||| ||||| || ||   |||||| || ||||||||||||||||||||| |||| || |||||||| ||||| |||||||||||     || | || ||||||
---------------------------------------------------------------------------------------------------------------------------------------------gtaagccagctctaga----aaccattgtttgatccgagc--tgttc-ttcagGAAGACGCGCGGACAGGGAGCCGGTCGTAAGCTCAAGAACCACCGCCGGGCGCAATTGTGGGCGGACAAATCCTACAAGAAGCGCAACCTCGGCAACGAG

upper sequence: PP1S61_268V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ06574 (Selaginella moellendorffii), 3'ss of exon 1
gtatgttgtgtctgttcgtcttatttcatcttttgaatctccactgtgaaagttttggagaagattttcgagagctgtgtgtttggtacttcacttcggggttagggtttcgttgatttggctcgttggatgggttaggagacgagctgagactaaacatggattggtgtggggtccgtgttttgttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGCTCAGTTGTGGGCTGACAAGTCCTACAAGAAATCTCACTTGGGTAACGAG
                                                                                                                                                |||     ||| | ||  |||| |    | |||| |   ||||| | ||| ||||| || ||   |||||| || ||||||||||||||||||||| |||| || |||||||| ||||| |||||||||||     || | || ||||||
---------------------------------------------------------------------------------------------------------------------------------------------gtaagccagctctaga-atccattgttt---gatccgagc--tgttc-ttcagGAAGACGCGCGGACAGGGAGCCGGTCGTAAGCTCAAGAACCACCGCCGGGCGCAATTGTGGGCGGACAAATCCTACAAGAAGCGCAACCTCGGCAACGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162218830|gb|FC394373.1|FC394373
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|19789259|gb|BQ041199.1|BQ041199
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162218829|gb|FC394372.1|FC394372
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162241806|gb|FC418061.1|FC418061
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162279184|gb|FC455731.1|FC455731
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|16137650|gb|BI894514.1|BI894514
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|16137630|gb|BI894494.1|BI894494
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162263100|gb|FC440078.1|FC440078
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162218663|gb|FC394629.1|FC394629
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|16137566|gb|BI894430.1|BI894430
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|15727797|gb|BI740468.1|BI740468
EST:     GAACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162259712|gb|FC436731.1|FC436731
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|67726745|gb|BJ977004.1|BJ977004
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162224659|gb|FC401907.1|FC401907
EST:     CGCATTGCCACCCNGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: CGCATTGCCACCC-GCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|19788029|gb|BQ040701.1|BQ040701
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|67703208|gb|BJ963441.1|BJ963441
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162262846|gb|FC438758.1|FC438758
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162243719|gb|FC421840.1|FC421840
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162208658|gb|FC385055.1|FC385055
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162235889|gb|FC411632.1|FC411632
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|18354999|gb|BJ187058.1|BJ187058
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|16137633|gb|BI894497.1|BI894497
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162263099|gb|FC440077.1|FC440077
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|16137503|gb|BI894367.1|BI894367
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|37831610|gb|BJ589622.1|BJ589622
EST:     CCTTCGCATTGCCACCCGCTTTTCCAGCNTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: CCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|18355237|gb|BJ187296.1|BJ187296
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|67508378|gb|BJ941245.1|BJ941245
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162205129|gb|FC381227.1|FC381227
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162206582|gb|FC382951.1|FC382951
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|16137577|gb|BI894441.1|BI894441
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|18330307|gb|BJ162313.1|BJ162313
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162224658|gb|FC401906.1|FC401906
EST:     CGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: CGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162235888|gb|FC411631.1|FC411631
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162244185|gb|FC423762.1|FC423762
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162259128|gb|FC436422.1|FC436422
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|67508110|gb|BJ940981.1|BJ940981
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|208351940|gb|DC917973.1|DC917973
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|37833662|gb|BJ591674.1|BJ591674
EST:     CATTGCCACCCGCTNTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: CATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162253922|gb|FC430192.1|FC430192
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162274149|gb|FC450221.1|FC450221
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|67575578|gb|BJ948402.1|BJ948402
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162202115|gb|FC378036.1|FC378036
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162202114|gb|FC378035.1|FC378035
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|18326235|gb|BJ158234.1|BJ158234
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|67573196|gb|BJ946020.1|BJ946020
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162218239|gb|FC394218.1|FC394218
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|19790194|gb|BQ041747.1|BQ041747
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162205218|gb|FC380900.1|FC380900
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|19780542|gb|BQ039573.1|BQ039573
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|19781174|gb|BQ039663.1|BQ039663
EST:     GCACTCTAACCTTCACATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACAGGGTATGGGAGCTGGGCGTAAGATCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162259713|gb|FC436732.1|FC436732
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|18351950|gb|BJ184002.1|BJ184002
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAANCTCAAGAACCACCGNAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|67701005|gb|BJ961238.1|BJ961238
EST:     CGCATTGCCACCCGNTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: CGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|18351545|gb|BJ183597.1|BJ183597
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162219792|gb|FC396204.1|FC396204
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162205128|gb|FC381226.1|FC381226
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|18334010|gb|BJ166026.1|BJ166026
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|37832188|gb|BJ590200.1|BJ590200
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|67568799|gb|BJ941623.1|BJ941623
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162251254|gb|FC428533.1|FC428533
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|19776363|gb|BQ039071.1|BQ039071
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|16137634|gb|BI894498.1|BI894498
EST:     GCACTCTAACCTTC-CA-TGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|19780982|gb|BQ039636.1|BQ039636
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|18356721|gb|BJ188780.1|BJ188780
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162242648|gb|FC415013.1|FC415013
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|208393468|gb|DC904072.1|DC904072
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|67572345|gb|BJ945169.1|BJ945169
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162218240|gb|FC394219.1|FC394219
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|16137560|gb|BI894424.1|BI894424
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|18338126|gb|BJ170150.1|BJ170150
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162242018|gb|FC418377.1|FC418377
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|67578138|gb|BJ950305.1|BJ950305
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162251253|gb|FC428532.1|FC428532
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|16137617|gb|BI894481.1|BI894481
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|67699052|gb|BJ959285.1|BJ959285
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|16137607|gb|BI894471.1|BI894471
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|16137619|gb|BI894483.1|BI894483
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162274150|gb|FC450222.1|FC450222
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|67571553|gb|BJ944377.1|BJ944377
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         A
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcag-
EST: gi|67571553|gb|BJ944377.1|BJ944377
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         A
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcag-
EST: gi|37821797|gb|BJ579863.1|BJ579863
EST:     TCGCATTGCCACCCGCTNTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: TCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|16137517|gb|BI894387.1|BI894387
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|37850912|gb|BJ608920.1|BJ608920
EST:     TTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: TTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162238470|gb|FC417377.1|FC417377
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162244186|gb|FC423763.1|FC423763
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|18334157|gb|BJ166173.1|BJ166173
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162253921|gb|FC430191.1|FC430191
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|16137688|gb|BI894552.1|BI894552
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|67718257|gb|BJ968516.1|BJ968516
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162273790|gb|FC449721.1|FC449721
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|37835391|gb|BJ593403.1|BJ593403
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGGCACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162252892|gb|FC429265.1|FC429265
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|18353918|gb|BJ185973.1|BJ185973
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGGCACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|16137651|gb|BI894515.1|BI894515
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|162261622|gb|FC438055.1|FC438055
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
EST: gi|18342654|gb|BJ174689.1|BJ174689
EST:     GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGG                         TAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC
genomic: GCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 74

CGGAGGTTCTACAGCAAGCGTCGCGCTTCGCCTCTCCCTCTTTCGTCCTCGCACTCTAACCTTCGCATTGCCACCCGCTCTTCCAGCCTCTCACCATGGGgtatgttgtg ... gttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGCTCAGTTGTGGGCTGACAAGTCCTACAAGAAATCTCACTTGGGTAACGAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agacgagctgagactaaacatggattggtgtggggtccgtgttttgttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGCTCAGTTGTGGGCTGACAAGTCCTACAAGAAATCTCACTTGGGTAACGAG
           gactaaa  putative branch site (score: 74)
                                         ttttgttc  putative PPT
              taaacat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgttgtgtctgttcgtcttatttcatcttttgaatctccactgtgaaagttttggagaagattttcgagagctgtgtgtttggtacttcacttcggggttagggtttcgttgatttggctcgttggatgggttaggagacgagctgagactaaacatggattggtgtggggtccgtgttttgttcgtgcagTAAGACACGGGGTATGGGAGCTGGGCGTAAGCTCAAGAACCACCGCAGGGCTCAGTTGTGGGCTGACAAGTCCTACAAGAAATCTCACTTGGGTAACGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA