Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18360126|gb|BJ192188.1|BJ192188EST: TTCAGGAGAGCTACGGATCTGAAGCTGCCTCGGTAGACTTCATCTCTAAG GCCGCTGAAGCTCTAGCAAAAGTAAATAAATGGGCGAAAGACGAGACGCAC
genomic: TTCAGGAGAGCTACGGATCTGAAGCTGCCTCGGTAGACTTCATCTCTAAGgtactgaaat ... tggtgtgcagGCCGCTGAAGCTCTAGCAAAAGTAAATAAATGGGCGAAAGACGAGACGCAC
EST:
gi|100430543|gb|BY959922.1|BY959922EST: TTCAGGAGAGCTACGGATCTGAAGCTGCCTCGGTAGACTTCATCTCTAAG GCCGCTGAAGCTCTAGCAAAAGTAAATAAATGGGCGAAAGACGAGACGCAC
genomic: TTCAGGAGAGCTACGGATCTGAAGCTGCCTCGGTAGACTTCATCTCTAAGgtactgaaat ... tggtgtgcagGCCGCTGAAGCTCTAGCAAAAGTAAATAAATGGGCGAAAGACGAGACGCAC
EST:
gi|208391738|gb|DC937956.1|DC937956EST: TTCAGGAGAGCTACGGATCTGAAGCTGCCTCGGTAGACTTCATCTCTAAG GCCGCTGAAGCTCTAGCAAAAGTAAATAAATGGGCGAAAGACGAGACGCAC
genomic: TTCAGGAGAGCTACGGATCTGAAGCTGCCTCGGTAGACTTCATCTCTAAGgtactgaaat ... tggtgtgcagGCCGCTGAAGCTCTAGCAAAAGTAAATAAATGGGCGAAAGACGAGACGCAC
EST:
gi|18366405|gb|BJ198484.1|BJ198484EST: TTCAGGAGAGCTACGGATCTGAAGCTGCCTCGGTAGACTTCATCTCTAAG GCCGCTGAAGCTCTAGCAAAAGTAAATAAATGGGCGAAAGACGAGACGCAC
genomic: TTCAGGAGAGCTACGGATCTGAAGCTGCCTCGGTAGACTTCATCTCTAAGgtactgaaat ... tggtgtgcagGCCGCTGAAGCTCTAGCAAAAGTAAATAAATGGGCGAAAGACGAGACGCAC
EST:
gi|18366667|gb|BJ198746.1|BJ198746EST: TTCAGGAGAGCTACGGATCTGAAGCTGCCTCGGTAGGCTTCATCTCTAAG GCCGCTGAAGCTCTAGCAAAAGTAAATAAATGGGCGAAAGACGAGACGCAC
genomic: TTCAGGAGAGCTACGGATCTGAAGCTGCCTCGGTAGACTTCATCTCTAAGgtactgaaat ... tggtgtgcagGCCGCTGAAGCTCTAGCAAAAGTAAATAAATGGGCGAAAGACGAGACGCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTGTGGGTGGAGCAATCAGTGAAACTGAAACCTGCATTCCAGAAAATTCTTCAGGAGAGCTACGGATCTGAAGCTGCCTCGGTAGACTTCATCTCTAAGgtactgaaattaatttccttcttcctgcgtctccacaaaccctaccttgcttcactgctcccaattcctcgaatgatttgttttataattttttatatca
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC