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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatggttttccatttcttgatgaacccaccactctttcacagccttttgcctgcatgtcactaaaccattctgtgaatgttcatgacagGCTTTGACGGTTGCAATACGATTGCAAGGCCACAAAGCCCTCCAGTCAGGTCCTCACATTCTTGTCATTGTTCGTTGCACGGATAACAATATCATGTTCG

Basic information

species Physcomitrella patens
transcript PP1S61_208V6.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100435104|gb|BY979074.1|BY979074
EST:     AATCTCGTCTGTTGGCTCTGCAGTTCAACAATTTTTCTTATGCTTTGCAG                         GCTTTGACGGTTGCAATACGATTGCAAGGCCACAAAGCCCTCCAGTCAGGT
genomic: AATCTCGTCTGTTGGCTCTGCAGTTCAACAATTTTTCTTATGCTTTGCAGgtaagcatgg ... ttcatgacagGCTTTGACGGTTGCAATACGATTGCAAGGCCACAAAGCCCTCCAGTCAGGT
EST: gi|100430938|gb|BY959945.1|BY959945
EST:     AATCTCGTCTGTTGGCTCTGCAGTTCAACAATTTTTCTTATGCTTTGCAG                         GCTTTGACGGTTGCAATACGATTGCAAGGCCACAAAGCCCTCCAGTCAGGT
genomic: AATCTCGTCTGTTGGCTCTGCAGTTCAACAATTTTTCTTATGCTTTGCAGgtaagcatgg ... ttcatgacagGCTTTGACGGTTGCAATACGATTGCAAGGCCACAAAGCCCTCCAGTCAGGT
EST: gi|162166675|gb|FC342644.1|FC342644
EST:     AATCTCGTCTGTTGGCTCTGCAGTTCAACAATTTTTCTTATGCTTTGCAG                         GCTTTGACGGTTGCAATACGATTGCAAGGCCACAAAGCCCTCCAGTCAGGT
genomic: AATCTCGTCTGTTGGCTCTGCAGTTCAACAATTTTTCTTATGCTTTGCAGgtaagcatgg ... ttcatgacagGCTTTGACGGTTGCAATACGATTGCAAGGCCACAAAGCCCTCCAGTCAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcacagccttttgcctgcatgtcactaaaccattctgtgaatgttcatgacagGCTTTGACGGTTGCAATACGATTGCAAGGCCACAAAGCCCTCCAGTCAGGTCCTCACATTCTTGTCATTGTTCGTTGCACGGATAACAATATCATGTTCG
                        cactaaa  putative branch site (score: 2)