1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagtgagaccatcatctctcctaccactttgcacccactccctatggcctgcatttagaaagaaagaatcgggttttgtagtagaaatttgcattttagatgggtgcgctttacaatcccgtcctctgacgcctctcatctgggcttgctttgctgcagCGTGATAATCAAGGATGCGACCGTAGAAGATGTAGAG
species | Physcomitrella patens |
transcript | PP1S61_193V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGACGATTGCGACAATGCCATGAA CGTGATAATCAAGGATGCGACCGTAGAAGATGTAGAGEST: gi|37821266|gb|BJ579332.1|BJ579332
genomic: TCGACGATTGCGACAATGCCATGAAgtgagtgaga ... tttgctgcagCGTGATAATCAAGGATGCGACCGTAGAAGATGTAGAG
EST: ACGACCTCTCCATACCGCGGCATTCTCGACGATTGCGACAATGCCATGAA CGTGATAATCAAGGATGCGACCGTAGAAGATGTAGAG
genomic: ACGACCTCTCCATA-CGCGGCATTCTCGACGATTGCGACAATGCCATGAAgtgagtgaga ... tttgctgcagCGTGATAATCAAGGATGCGACCGTAGAAGATGTAGAG
tgcgctttacaatcccgtcctctgacgcctctcatctgggcttgctttgctgcagCGTGATAATCAAGGATGCGACCGTAGAAGATGTAGAG
ctctgac putative branch site (score: 3)
cttgcttt putative PPT
tttacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgagaccatcatctctcctaccactttgcacccactccctatggcctgcatttagaaagaaagaatcgggttttgtagtagaaatttgcattttagatgggtgcgctttacaatcccgtcctctgacgcctctcatctgggcttgctttgctgcagCGTGATAATCAAGGATGCGACCGTAGAAGATGTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG