1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgatcacaatgccgagttttgatgataatagcgctgcacttgcactcgaagcttgctcttttctgcaacctctcaattagattggtgaggcttgcaaagtgggatgtgggttcaatggttactgacggaaaggcgattcattcgtttggctgcagATGTCGAAACGGGGTCTTTCACGTTGTGAACAACAACTACGAAGGGTGGGGAATGTACGCCATCGGAGGGAGTGCGTTTCCAACAATCAATAGCGAGGGC
species | Physcomitrella patens |
transcript | PP1S563_1V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCG-GGCTTTCAACCA-TTCGGCAAAAATCTAG-TGAGCGGATGCCAAG ATGTCGAAAC-GGGTCTTTCACGTTGTGAACAACAACTACGAAGGGTGGGGEST: gi|208379492|gb|DC911103.1|DC911103
genomic: ACCGTGGCTTTCAACCATTTCGGCAAAAATCTAGTTGAGCGGATGCCAAGgtgatcacaa ... ttggctgcagATGTCGAAACGGGGTCTTTCACGTTGTGAACAACAACTACGAAGGGTGGGG
EST: ACCGTGGCTTTCAACCATTTCGGCAAAAATCTAGTTGAGCGGATGCCAAG ATGTCNAAACGGGGTCTTTCACGTTGTGAACAACAACTACGAAGGGTGGGGEST: gi|208381592|gb|DC915458.1|DC915458
genomic: ACCGTGGCTTTCAACCATTTCGGCAAAAATCTAGTTGAGCGGATGCCAAGgtgatcacaa ... ttggctgcagATGTCGAAACGGGGTCTTTCACGTTGTGAACAACAACTACGAAGGGTGGGG
EST: AAAATCTAGTT-AGCGGATGCCAAG ATGTCGAAAC-GGGTCTTTCACGNTGTGAACAACAACTACGAAGGGTGGGGEST: gi|208379611|gb|DC927108.1|DC927108
genomic: AAAATCTAGTTGAGCGGATGCCAAGgtgatcacaa ... ttggctgcagATGTCGAAACGGGGTCTTTCACGTTGTGAACAACAACTACGAAGGGTGGGG
EST: CCNGTGGCTTTCAACCATTTCGGCAAAAATCTAGTTGAGCGGATGCCAAG ATGTCGAAACGGGGTCTTTTCACGTTGTGAACAACAACTACGAAGGGTGGG
genomic: CC-GTGGCTTTCAACCATTTCGGCAAAAATCTAGTTGAGCGGATGCCAAGgtgatcacaa ... ttggctgcagATGTCGAAACGGGGTC-TTTCACGTTGTGAACAACAACTACGAAGGGTGGG
gggatgtgggttcaatggttactgacggaaaggcgattcattcgtttggctgcagATGTCGAAACGGGGTCTTTCACGTTGTGAACAACAACTACGAAGGGTGGGGAATGTACGCCATCGGAGGGAGTGCGTTTCCAACAATCAATAGCGAGGGC
tactgac putative branch site (score: 25)
ttcgttt putative PPT
attcatt TA-rich tract