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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttgtagccctcgcctcttcgcatggcgccagtggattatgaactgatttttgagaatctaaagcgtgatttctaacgtagagaggtgcaatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGTGGACGACTGCTGGAGGTGTAGCAGCAATTGGGAAAGCAATCGTCAGGGC

Basic information

species Physcomitrella patens
transcript PP1S563_1V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S563_1V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: Vv14s0219g00230.t01 (Vitis vinifera), 3'ss of exon 1
gtttgtagccc-tcgcctcttcgcatgg-cgccagtggattatgaactgatttttgagaatctaaagc-----gtgatttctaacgtagagaggtgcaatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGTGGACGACTGCTGGAGGTGTAGCAGCAATTGGGAAAGCAATCGTCAGGGC
||   ||  || | |    | || | |    | |    |||  ||| || | ||    | |   ||||      || ||||     |  | ||| |||   ||    ||| |  || | |    ||| | |       |||||||||||||||||| | ||||| |||||||||||   |  ||| ||||| |  ||          
gtgaatattccattgttgatccggaagaatactatacaatttggaaatggtgttatcaactactaagctaaaaatgttttcgtttttttacagGAGCAT--CAATGCCTCTAGGAGGAACTTGGGCTATTTCTC---TTGTGGAACAGGCAACCCTATCGACGATTGCTGGAGGTGCGACGCCAACTGGGACAAGAAC---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208350056|gb|DC910291.1|DC910291
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100436673|gb|BY979468.1|BY979468
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|100417441|gb|BY957332.1|BY957332
EST:     ACCTCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100446044|gb|CJ970343.1|CJ970343
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100435443|gb|BY979247.1|BY979247
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGG
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTG-
EST: gi|100359145|gb|BY965613.1|BY965613
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|67703305|gb|BJ963538.1|BJ963538
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCCGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAG
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAG
EST: gi|100384663|gb|BY950653.1|BY950653
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|100447253|gb|CJ971552.1|CJ971552
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|100431972|gb|BY978600.1|BY978600
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|208350272|gb|DC901628.1|DC901628
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100360531|gb|BY984156.1|BY984156
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|100430630|gb|BY978316.1|BY978316
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|100417898|gb|BY993239.1|BY993239
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100388499|gb|BY952101.1|BY952101
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|67709422|gb|BJ965238.1|BJ965238
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100392845|gb|BY971910.1|BY971910
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CNTC-AACAGTACCCGCCGCTCTCTGGGGAG-CTGTGGAACAGGCAACCCT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC-TCCAACAGTACCCGCCGCTCTCTGGG-AGGCTGTGGAACAGGCAACCCT
EST: gi|67716183|gb|BJ966443.1|BJ966443
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|100402839|gb|BY973377.1|BY973377
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|208346699|gb|DC913345.1|DC913345
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|100378872|gb|BY968731.1|BY968731
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100407971|gb|BY955859.1|BY955859
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|100371985|gb|BY967649.1|BY967649
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|67717475|gb|BJ967734.1|BJ967734
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCCGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100433093|gb|BY978806.1|BY978806
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|67710240|gb|BJ965903.1|BJ965903
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|100360224|gb|BY966077.1|BY966077
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|208345958|gb|DC901815.1|DC901815
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100446132|gb|CJ970431.1|CJ970431
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|100374662|gb|BY949011.1|BY949011
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGCAG                       
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTC-G--Ggtaagggagt ... aatgcagc
EST: gi|100414562|gb|BY956753.1|BY956753
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|100432505|gb|BY960490.1|BY960490
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|67717211|gb|BJ967470.1|BJ967470
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100449411|gb|CJ973710.1|CJ973710
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|67717456|gb|BJ967715.1|BJ967715
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|100373190|gb|BY949248.1|BY949248
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|100433788|gb|BY960707.1|BY960707
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100384009|gb|BY950395.1|BY950395
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100420010|gb|BY975932.1|BY975932
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100436306|gb|BY961151.1|BY961151
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGGACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|100428757|gb|BY959418.1|BY959418
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|100446147|gb|CJ970446.1|CJ970446
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100384825|gb|BY969560.1|BY969560
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         G
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcag-
EST: gi|100384825|gb|BY969560.1|BY969560
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         G
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcag-
EST: gi|67704805|gb|BJ965038.1|BJ965038
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|100375322|gb|BY948839.1|BY948839
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
EST: gi|100414588|gb|BY956766.1|BY956766
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTNGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|67709991|gb|BJ965807.1|BJ965807
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagC---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100449025|gb|CJ973324.1|CJ973324
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 31 (downstream exon)
Score: 41

TCCGGCCTTTGACCTCATTCTCGGCGTCTCAGGTGCCGGAAGAGCATCAGACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... aatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGTGGACGACTGCTGGAGGTGTAGCAGCAATTGGGAAAGCAATCGTCAGGGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatttttgagaatctaaagcgtgatttctaacgtagagaggtgcaatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGTGGACGACTGCTGGAGGTGTAGCAGCAATTGGGAAAGCAATCGTCAGGGC
                          ttctaac  putative branch site (score: 41)
           aatctaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgtagccctcgcctcttcgcatggcgccagtggattatgaactgatttttgagaatctaaagcgtgatttctaacgtagagaggtgcaatgcagcagCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCCTGTGGACGACTGCTGGAGGTGTAGCAGCAATTGGGAAAGCAATCGTCAGGGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA