Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatcctcattctgatcagctctctctctctcgcttgcaagtccccgttgctgtcattccaacctagatcatgcttcacagaatagttgactaccgactgactacaccatttggtgcacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTATCGGGTACACGTTCGGTGCAGGAATGTTCGAGATGAATGAGGTGAAGGGC

Basic information

species Physcomitrella patens
transcript PP1S55_98V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162273424|gb|FC449873.1|FC449873
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|67701043|gb|BJ961276.1|BJ961276
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162241016|gb|FC416647.1|FC416647
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|18363483|gb|BJ195555.1|BJ195555
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162207201|gb|FC382523.1|FC382523
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|208351221|gb|DC918108.1|DC918108
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162204898|gb|FC381515.1|FC381515
EST:     TTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCATTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: TTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162268184|gb|FC443862.1|FC443862
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|18351433|gb|BJ183485.1|BJ183485
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|208392322|gb|DC904210.1|DC904210
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|37840616|gb|BJ598624.1|BJ598624
EST:     GGATTNTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGA-TCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|208366835|gb|DC940149.1|DC940149
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|67578695|gb|BJ950862.1|BJ950862
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|67577811|gb|BJ949978.1|BJ949978
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|37824526|gb|BJ582592.1|BJ582592
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162220927|gb|FC396112.1|FC396112
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|208393551|gb|DC949713.1|DC949713
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|37840070|gb|BJ598078.1|BJ598078
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|37834358|gb|BJ592370.1|BJ592370
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162190129|gb|FC365871.1|FC365871
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162233470|gb|FC410241.1|FC410241
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|208367048|gb|DC935904.1|DC935904
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|67507439|gb|BJ940322.1|BJ940322
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162278474|gb|FC454560.1|FC454560
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162190130|gb|FC365872.1|FC365872
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162250834|gb|FC426878.1|FC426878
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162267309|gb|FC442097.1|FC442097
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|67699405|gb|BJ959638.1|BJ959638
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162150981|gb|FC327877.1|FC327877
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162204899|gb|FC381516.1|FC381516
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|18345641|gb|BJ177684.1|BJ177684
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|37830779|gb|BJ588791.1|BJ588791
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|208349973|gb|DC913681.1|DC913681
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|67700383|gb|BJ960616.1|BJ960616
EST:     CTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: CTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162233469|gb|FC410240.1|FC410240
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162267310|gb|FC442098.1|FC442098
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|67507544|gb|BJ940426.1|BJ940426
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162207200|gb|FC382522.1|FC382522
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|208380161|gb|DC927440.1|DC927440
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|37850276|gb|BJ608284.1|BJ608284
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|37843568|gb|BJ601576.1|BJ601576
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|67568848|gb|BJ941672.1|BJ941672
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162241017|gb|FC416648.1|FC416648
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162220928|gb|FC396113.1|FC396113
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162254274|gb|FC429993.1|FC429993
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|67692052|gb|BJ952285.1|BJ952285
EST:     GGGATCTTNTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162273423|gb|FC449872.1|FC449872
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|67570194|gb|BJ943018.1|BJ943018
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162268185|gb|FC443863.1|FC443863
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|37849468|gb|BJ607476.1|BJ607476
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|67578176|gb|BJ950343.1|BJ950343
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|67575920|gb|BJ948744.1|BJ948744
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162278473|gb|FC454559.1|FC454559
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATTTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|162150980|gb|FC327876.1|FC327876
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATTTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
EST: gi|37824757|gb|BJ582823.1|BJ582823
EST:     GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGC                         GTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT
genomic: GGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 9

ATGCTACCGGTGGATTGTGGAGGACACAATCACTGGCTGGAAAGCCTGCGGGGATCTTCTTCAGCACTGGTTCTCAGGGAGGCGGCCAGGAGACCACTGCgtaagtatcc ... cacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTATCGGGTACACGTTCGGTGCAGGAATGTTCGAGATGAATGAGGTGAAGGGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttcacagaatagttgactaccgactgactacaccatttggtgcacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTATCGGGTACACGTTCGGTGCAGGAATGTTCGAGATGAATGAGGTGAAGGGC
                        gactgac  putative branch site (score: 9)
          aatagtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtatcctcattctgatcagctctctctctctcgcttgcaagtccccgttgctgtcattccaacctagatcatgcttcacagaatagttgactaccgactgactacaccatttggtgcacattccagGTTGACAGCCATCACACAGCTCACGCATCACGGCATGATCTACGTCCCTATCGGGTACACGTTCGGTGCAGGAATGTTCGAGATGAATGAGGTGAAGGGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG