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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggtgctttatatcttttcttttcttttattggggcgagggtatctgactgaaagatgtttttggatttactgagaagttggatacattgagaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCCAAGTCCGACGTGCCTCCCATCAGCCCAGCTCAACTCCCTGATGCCGATG

Basic information

species Physcomitrella patens
transcript PP1S55_98V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162273424|gb|FC449873.1|FC449873
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|18363483|gb|BJ195555.1|BJ195555
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|162207201|gb|FC382523.1|FC382523
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|208351221|gb|DC918108.1|DC918108
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|18373048|gb|BJ204650.1|BJ204650
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|162268184|gb|FC443862.1|FC443862
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|18351433|gb|BJ183485.1|BJ183485
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|18368990|gb|BJ201075.1|BJ201075
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|208392322|gb|DC904210.1|DC904210
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|208366835|gb|DC940149.1|DC940149
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCAAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|67577811|gb|BJ949978.1|BJ949978
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|37824526|gb|BJ582592.1|BJ582592
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|18375377|gb|BJ206955.1|BJ206955
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|162220927|gb|FC396112.1|FC396112
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|208393551|gb|DC949713.1|DC949713
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTTCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|37834358|gb|BJ592370.1|BJ592370
EST:     TCAAACGGGGGNCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|18352919|gb|BJ184974.1|BJ184974
EST:     CAAACGGGGGGCCGAGAGTGTTGAGGGGTGTCGAAGTGACTTTGTATCAN                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: CAAACGGGGGGCCGAGAGTGTTGAGGG-TGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|162190129|gb|FC365871.1|FC365871
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|162233470|gb|FC410241.1|FC410241
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|208367048|gb|DC935904.1|DC935904
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTTCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|67507439|gb|BJ940322.1|BJ940322
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|162278474|gb|FC454560.1|FC454560
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|162190130|gb|FC365872.1|FC365872
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|162267309|gb|FC442097.1|FC442097
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|18362850|gb|BJ194922.1|BJ194922
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|162150981|gb|FC327877.1|FC327877
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|162204899|gb|FC381516.1|FC381516
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|18345641|gb|BJ177684.1|BJ177684
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|208349973|gb|DC913681.1|DC913681
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|162233469|gb|FC410240.1|FC410240
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|18345474|gb|BJ177517.1|BJ177517
EST:     CAAACGGGGGGCCGAGAGTGTTGAGGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: CAAACGGGGGGCCGAGAGTGTTGA-GGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|162267310|gb|FC442098.1|FC442098
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|67507544|gb|BJ940426.1|BJ940426
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|162207200|gb|FC382522.1|FC382522
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|208380161|gb|DC927440.1|DC927440
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|37850276|gb|BJ608284.1|BJ608284
EST:     TGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|37843568|gb|BJ601576.1|BJ601576
EST:     GTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGNTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: GTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|67568848|gb|BJ941672.1|BJ941672
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|162241017|gb|FC416648.1|FC416648
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|162220928|gb|FC396113.1|FC396113
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|162254274|gb|FC429993.1|FC429993
EST:     GTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: GTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|67576847|gb|BJ949671.1|BJ949671
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|162273423|gb|FC449872.1|FC449872
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|67570194|gb|BJ943018.1|BJ943018
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|162268185|gb|FC443863.1|FC443863
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|37849468|gb|BJ607476.1|BJ607476
EST:     GGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTNGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: GGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|67578176|gb|BJ950343.1|BJ950343
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|67575920|gb|BJ948744.1|BJ948744
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|162278473|gb|FC454559.1|FC454559
EST:     TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
EST: gi|37824757|gb|BJ582823.1|BJ582823
EST:     TCAAACGGGGGNCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAA                         GTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC
genomic: TCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 22 (upstream exon), 35 (downstream exon)
Score: 46

GTACTATTCCATGTATGGTCACATCGAAACACTTGCGAAAGAAATCAAACGGGGGGCCGAGAGTGTTGAGGGTGTCGAAGTGACTTTGTATCAAgtaagttttt ... agaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCCAAGTCCGACGTGCCTCCCATCAGCCCAGCTCAACTCCCTGATGCCGATG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgactgaaagatgtttttggatttactgagaagttggatacattgagaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCCAAGTCCGACGTGCCTCCCATCAGCCCAGCTCAACTCCCTGATGCCGATG
 atctgac  putative branch site (score: 46)
          atgttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tggtgctttatatcttttcttttcttttattggggcgagggtatctgactgaaagatgtttttggatttactgagaagttggatacattgagaattgcagGTGCCGGAGACTTTGCCAGCAGAGGTTTTGGGAAAGATGGGTGCGCCAGCCAAGTCCGACGTGCCTCCCATCAGCCCAGCTCAACTCCCTGATGCCGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA