Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGCCTTATGCATCCATCCCTCTGCCTCGGGCGCGTTTACTTGACGTTTATGTTCTCTGGCACTGTGTCATCACAATTTCAGgtgcaattatacaaatcctatgcttctttctcactgttcctgattctatgtgctctgtttaccaactgaaggttgatatcgtagttgttaagctttcgtt...

Basic information

species Physcomitrella patens
transcript PP1S55_93V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100448430|gb|CJ972729.1|CJ972729
EST:     ACTTGACGTTTATGTTCTCTGGCACTGTGTCATCACAATTTCAG                         GCTGCGACTATTCTGTGGATGTAATGTAGTGGTGGTTCAGATTTACCTTCC
genomic: ACTTGACGTTTATGTTCTCTGGCACTGTGTCATCACAATTTCAGgtgcaattat ... tgcatttcagGCTGCGACTATTCTGTGGATGTAATGTAGTGGTGGTTCAGATTTACCTTCC
EST: gi|162264374|gb|FC440540.1|FC440540
EST:     GCGTTTACTTGACGTTTATGTTCTCTGGCACTGTGTCATCACAATTTCAG                         GCTGCGACTATTCTGTGGATGTAATGTAGTGGTGGTTCAGATTTACCTTCC
genomic: GCGTTTACTTGACGTTTATGTTCTCTGGCACTGTGTCATCACAATTTCAGgtgcaattat ... tgcatttcagGCTGCGACTATTCTGTGGATGTAATGTAGTGGTGGTTCAGATTTACCTTCC
EST: gi|208356548|gb|DC938659.1|DC938659
EST:     ACTTGACGTTTATGTTCTCTGGCACTGTGTCATCACAATTTCAG                         GCTGCGACTATTCTGTGGATGTAATGTAGTGGTGGTTCAGATTTACCTTCC
genomic: ACTTGACGTTTATGTTCTCTGGCACTGTGTCATCACAATTTCAGgtgcaattat ... tgcatttcagGCTGCGACTATTCTGTGGATGTAATGTAGTGGTGGTTCAGATTTACCTTCC
EST: gi|162179570|gb|FC356610.1|FC356610
EST:     GTTCTCTGGCACTGTGTCATCACAATTTCAG                         GCTGCGACTATTCTGTGGATGTAATGTAGTGGTGGTTCAGATTTACCTTCC
genomic: GTTCTCTGGCACTGTGTCATCACAATTTCAGgtgcaattat ... tgcatttcagGCTGCGACTATTCTGTGGATGTAATGTAGTGGTGGTTCAGATTTACCTTCC