Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|100448430|gb|CJ972729.1|CJ972729EST: ACTTGACGTTTATGTTCTCTGGCACTGTGTCATCACAATTTCAG GCTGCGACTATTCTGTGGATGTAATGTAGTGGTGGTTCAGATTTACCTTCC
genomic: ACTTGACGTTTATGTTCTCTGGCACTGTGTCATCACAATTTCAGgtgcaattat ... tgcatttcagGCTGCGACTATTCTGTGGATGTAATGTAGTGGTGGTTCAGATTTACCTTCC
EST:
gi|162264374|gb|FC440540.1|FC440540EST: GCGTTTACTTGACGTTTATGTTCTCTGGCACTGTGTCATCACAATTTCAG GCTGCGACTATTCTGTGGATGTAATGTAGTGGTGGTTCAGATTTACCTTCC
genomic: GCGTTTACTTGACGTTTATGTTCTCTGGCACTGTGTCATCACAATTTCAGgtgcaattat ... tgcatttcagGCTGCGACTATTCTGTGGATGTAATGTAGTGGTGGTTCAGATTTACCTTCC
EST:
gi|208356548|gb|DC938659.1|DC938659EST: ACTTGACGTTTATGTTCTCTGGCACTGTGTCATCACAATTTCAG GCTGCGACTATTCTGTGGATGTAATGTAGTGGTGGTTCAGATTTACCTTCC
genomic: ACTTGACGTTTATGTTCTCTGGCACTGTGTCATCACAATTTCAGgtgcaattat ... tgcatttcagGCTGCGACTATTCTGTGGATGTAATGTAGTGGTGGTTCAGATTTACCTTCC
EST:
gi|162179570|gb|FC356610.1|FC356610EST: GTTCTCTGGCACTGTGTCATCACAATTTCAG GCTGCGACTATTCTGTGGATGTAATGTAGTGGTGGTTCAGATTTACCTTCC
genomic: GTTCTCTGGCACTGTGTCATCACAATTTCAGgtgcaattat ... tgcatttcagGCTGCGACTATTCTGTGGATGTAATGTAGTGGTGGTTCAGATTTACCTTCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgagttgttaaccgctgggttcctactgagttttaatttgaagctgcatttcagGCTGCGACTATTCTGTGGATGTAATGTAGTGGTGGTTCAGATTTACCTTCCAAAATGGCGCAGTGTGGCACTGCTCTAGTCCAATTCTCATTGGCAAAGT
agttttaatttgaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtttgtttaattctttgaggacgagttttgaggagaacaagtctttgagttgttaaccgctgggttcctactgagttttaatttgaagctgcatttcagGCTGCGACTATTCTGTGGATGTAATGTAGTGGTGGTTCAGATTTACCTTCCAAAATGGCGCAGTGTGGCACTGCTCTAGTCCAATTCTCATTGGCAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG